fibrillar center Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures. (Gene Ontology, GO_0001650)
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42 proteins co-occuring with the fibrillar center cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FBLL1 fibrillarin-like 1 1.96497
NCL nucleolin 1.72182
WDR43 WD repeat domain 43 1.48927
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 1.45081
UBTF upstream binding transcription factor, RNA polymerase I 1.40186
CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 1.2476
NOL10 nucleolar protein 10 1.18903
DCAF13 DDB1 and CUL4 associated factor 13 1.17465
NSUN5 NOP2/Sun domain family, member 5 1.11225
WNT10A wingless-type MMTV integration site family, member 10A 1.09747
TOP1 topoisomerase (DNA) I 0.987806
DNTT DNA nucleotidylexotransferase 0.956874
CD3EAP CD3e molecule, epsilon associated protein 0.954961
TBL3 transducin (beta)-like 3 0.947808
NPB neuropeptide B 0.925135
WDR46 WD repeat domain 46 0.918111
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) 0.807982
COIL coilin 0.801104
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.770451
SRSF2 serine/arginine-rich splicing factor 2 0.746381
NOP2 NOP2 nucleolar protein 0.682027
STAP2 signal transducing adaptor family member 2 0.623504
RHOA ras homolog family member A 0.468001
POLI polymerase (DNA directed) iota 0.423174
DNASE1 deoxyribonuclease I 0.412992
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.390068
JMJD6 jumonji domain containing 6 0.375818
PPIB peptidylprolyl isomerase B (cyclophilin B) 0.363567
TOP2B topoisomerase (DNA) II beta 180kDa 0.349863
CBS cystathionine-beta-synthase 0.341151
MDK midkine (neurite growth-promoting factor 2) 0.320826
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.311105
CFD complement factor D (adipsin) 0.298084
SUMO3 small ubiquitin-like modifier 3 0.245685
SUMO2 small ubiquitin-like modifier 2 0.230601
ERCC1 excision repair cross-complementation group 1 0.226331
PTBP1 polypyrimidine tract binding protein 1 0.203699
TOP3A topoisomerase (DNA) III alpha 0.190814
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.187333
AP1M2 adaptor-related protein complex 1, mu 2 subunit 0.167611
AP2M1 adaptor-related protein complex 2, mu 1 subunit 0.166167
MUT methylmalonyl CoA mutase 0.16342