facit collagen trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A collagen trimer that associates with collagen fibrils and consists of collagen monomers that contain two or more relatively short triple-helical domains connected by non-triple-helical sequences. (Gene Ontology, GO_0005593)
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Genes

80 proteins co-occuring with the facit collagen trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL21A1 collagen, type XXI, alpha 1 2.01772
COL12A1 collagen, type XII, alpha 1 1.81983
COL19A1 collagen, type XIX, alpha 1 1.51299
COL9A3 collagen, type IX, alpha 3 1.50904
COL9A1 collagen, type IX, alpha 1 1.46326
COL14A1 collagen, type XIV, alpha 1 1.42148
COL9A2 collagen, type IX, alpha 2 1.02231
SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 0.919514
CEMIP cell migration inducing protein, hyaluronan binding 0.872266
C6 complement component 6 0.868126
CRYM crystallin, mu 0.850665
ACAN aggrecan 0.845614
C11ORF58 chromosome 11 open reading frame 58 0.799728
JAM2 junctional adhesion molecule 2 0.790564
GDF7 growth differentiation factor 7 0.728389
RPL23 ribosomal protein L23 0.692078
VCAN versican 0.686827
LECT1 leukocyte cell derived chemotaxin 1 0.664664
MIA melanoma inhibitory activity 0.633305
CRABP1 cellular retinoic acid binding protein 1 0.585523
HAPLN1 hyaluronan and proteoglycan link protein 1 0.585105
TNMD tenomodulin 0.54771
COL6A2 collagen, type VI, alpha 2 0.547297
COL5A2 collagen, type V, alpha 2 0.546472
SFRP2 secreted frizzled-related protein 2 0.524294
SOX9 SRY (sex determining region Y)-box 9 0.523067
FN1 fibronectin 1 0.51327
COL11A1 collagen, type XI, alpha 1 0.508383
MATN3 matrilin 3 0.49742
COL6A3 collagen, type VI, alpha 3 0.490944
KERA keratocan 0.474018
BGN biglycan 0.464397
FBN1 fibrillin 1 0.459602
FOXJ1 forkhead box J1 0.4425
SNAI1 snail family zinc finger 1 0.430647
SCX scleraxis basic helix-loop-helix transcription factor 0.430253
LAMC2 laminin, gamma 2 0.421997
ITGA1 integrin, alpha 1 0.418468
VWF von Willebrand factor 0.414164
S100A1 S100 calcium binding protein A1 0.40714
MSX1 msh homeobox 1 0.378507
COL6A1 collagen, type VI, alpha 1 0.374666
UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 0.351762
MSX2 msh homeobox 2 0.349105
CD3G CD3g molecule, gamma (CD3-TCR complex) 0.337751
DCN decorin 0.323075
TBX1 T-box 1 0.316334
GC group-specific component (vitamin D binding protein) 0.316334
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.315212
BMP6 bone morphogenetic protein 6 0.313344
FMOD fibromodulin 0.300682
COL3A1 collagen, type III, alpha 1 0.296601
UBB ubiquitin B 0.289938
B3GAT1 beta-1,3-glucuronyltransferase 1 0.27998
COL1A2 collagen, type I, alpha 2 0.278141
GDF5 growth differentiation factor 5 0.268603
LUM lumican 0.241356
SPP1 secreted phosphoprotein 1 0.236683
ENO1 enolase 1, (alpha) 0.234533
COMP cartilage oligomeric matrix protein 0.220673
CLDN4 claudin 4 0.219617
YBX1 Y box binding protein 1 0.213669
AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8) 0.187646
TGFB3 transforming growth factor, beta 3 0.186087
COL2A1 collagen, type II, alpha 1 0.1632
FGF2 fibroblast growth factor 2 (basic) 0.131228
TNS1 tensin 1 0.130375
HBE1 hemoglobin, epsilon 1 0.129091
RUNX2 runt-related transcription factor 2 0.123832
BMP7 bone morphogenetic protein 7 0.123679
MAG myelin associated glycoprotein 0.123327
TTN titin 0.120923
TNC tenascin C 0.120636
CA2 carbonic anhydrase II 0.118196
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.117793
ALPPL2 alkaline phosphatase, placental-like 2 0.117646
ALPL alkaline phosphatase, liver/bone/kidney 0.117616
ALPP alkaline phosphatase, placental 0.117586
PXN paxillin 0.116329
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor 0.115682