euchromatin Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A dispersed and relatively uncompacted form of chromatin. (Gene Ontology, GO_0000791)
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Genes

168 proteins co-occuring with the euchromatin cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
H3F3A H3 histone, family 3A 1.83406
H3F3B H3 histone, family 3B (H3.3B) 1.83406
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 1.82795
EHMT1 euchromatic histone-lysine N-methyltransferase 1 1.31789
CBX5 chromobox homolog 5 1.22724
HIST1H4D histone cluster 1, H4d 1.14801
HIST1H4E histone cluster 1, H4e 1.14801
HIST1H4A histone cluster 1, H4a 1.14801
HIST2H4A histone cluster 2, H4a 1.14801
HIST1H4B histone cluster 1, H4b 1.14801
HIST1H4C histone cluster 1, H4c 1.14801
HIST1H4F histone cluster 1, H4f 1.14801
HIST1H4J histone cluster 1, H4j 1.14801
HIST1H4K histone cluster 1, H4k 1.14801
HIST2H4B histone cluster 2, H4b 1.14801
HIST1H4I histone cluster 1, H4i 1.14801
HIST1H4H histone cluster 1, H4h 1.14801
HIST4H4 histone cluster 4, H4 1.1475
HIST1H4L histone cluster 1, H4l 1.1475
CBX3 chromobox homolog 3 0.966956
HIST2H2AA3 histone cluster 2, H2aa3 0.931716
HIST2H2AC histone cluster 2, H2ac 0.931716
HIST2H2AA4 histone cluster 2, H2aa4 0.931716
CTCF CCCTC-binding factor (zinc finger protein) 0.876409
HMGB3 high mobility group box 3 0.857555
TMED5 transmembrane emp24 protein transport domain containing 5 0.844696
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 0.841941
HIST2H2BE histone cluster 2, H2be 0.837351
MYNN myoneurin 0.818534
CXXC1 CXXC finger protein 1 0.768171
SETD1A SET domain containing 1A 0.760433
NANOG Nanog homeobox 0.679849
ZNF160 zinc finger protein 160 0.651299
ITFG1 integrin alpha FG-GAP repeat containing 1 0.647862
EHMT2 euchromatic histone-lysine N-methyltransferase 2 0.631598
H2AFX H2A histone family, member X 0.626483
SHCBP1 SHC SH2-domain binding protein 1 0.624355
MAGEA1 melanoma antigen family A1 0.597697
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila) 0.553078
HIST2H3A histone cluster 2, H3a 0.550599
HIST2H3D histone cluster 2, H3d 0.550599
HIST2H3C histone cluster 2, H3c 0.550599
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 0.54606
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 0.540706
HDAC9 histone deacetylase 9 0.538238
SPANXA1 sperm protein associated with the nucleus, X-linked, family member A1 0.53454
SPANXA2 SPANX family, member A2 0.53454
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 0.518573
DNMT1 DNA (cytosine-5-)-methyltransferase 1 0.517756
IER3IP1 immediate early response 3 interacting protein 1 0.51327
SETD2 SET domain containing 2 0.509197
SNRPN small nuclear ribonucleoprotein polypeptide N 0.495395
ZNF33A zinc finger protein 33A 0.466799
MT1H metallothionein 1H 0.465198
NUDT2 nudix (nucleoside diphosphate linked moiety X)-type motif 2 0.444482
CHD1 chromodomain helicase DNA binding protein 1 0.438937
ZFP42 ZFP42 zinc finger protein 0.43696
DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 0.431435
KDM1A lysine (K)-specific demethylase 1A 0.427497
ELP3 elongator acetyltransferase complex subunit 3 0.41143
RELB v-rel avian reticuloendotheliosis viral oncogene homolog B 0.410649
ATM ATM serine/threonine kinase 0.40675
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like 0.402859
TRIM24 tripartite motif containing 24 0.39626
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.391615
IPPK inositol 1,3,4,5,6-pentakisphosphate 2-kinase 0.37966
H2AFY H2A histone family, member Y 0.377738
JAKMIP1 janus kinase and microtubule interacting protein 1 0.373899
CHAF1A chromatin assembly factor 1, subunit A (p150) 0.369684
CTTNBP2 cortactin binding protein 2 0.367771
SETDB1 SET domain, bifurcated 1 0.357086
SIRT1 sirtuin 1 0.354422
MDC1 mediator of DNA-damage checkpoint 1 0.354422
DPPA3 developmental pluripotency associated 3 0.353662
PRDM14 PR domain containing 14 0.349863
GCM1 glial cells missing homolog 1 (Drosophila) 0.34645
EP400 E1A binding protein p400 0.346071
PRMT7 protein arginine methyltransferase 7 0.341907
HIRA histone cell cycle regulator 0.340773
PROM1 prominin 1 0.339639
NTN4 netrin 4 0.336996
CBX6 chromobox homolog 6 0.332472
ADGRL3 adhesion G protein-coupled receptor L3 0.328332
ALKBH1 alkB, alkylation repair homolog 1 (E. coli) 0.32195
PCNA proliferating cell nuclear antigen 0.321201
ELP4 elongator acetyltransferase complex subunit 4 0.320451
PIWIL2 piwi-like RNA-mediated gene silencing 2 0.318205
H1FNT H1 histone family, member N, testis-specific 0.315212
EOMES eomesodermin 0.313158
IL33 interleukin 33 0.309054
BCL9 B-cell CLL/lymphoma 9 0.302912
HMGN5 high mobility group nucleosome binding domain 5 0.297713
H2AFV H2A histone family, member V 0.289938
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.28846
RBBP7 retinoblastoma binding protein 7 0.284769
FGF2 fibroblast growth factor 2 (basic) 0.284401
H2AFY2 H2A histone family, member Y2 0.283663
GABPA GA binding protein transcription factor, alpha subunit 60kDa 0.282189
FRG1 FSHD region gene 1 0.277406
RGS10 regulator of G-protein signaling 10 0.276671
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 0.268603
MBD1 methyl-CpG binding domain protein 1 0.266042
WAPAL wings apart-like homolog (Drosophila) 0.264581
KAT5 K(lysine) acetyltransferase 5 0.263485
VIPR2 vasoactive intestinal peptide receptor 2 0.262025
CGB5 chorionic gonadotropin, beta polypeptide 5 0.245323
CGB7 chorionic gonadotropin, beta polypeptide 7 0.245323
SETD1B SET domain containing 1B 0.24424
CCDC101 coiled-coil domain containing 101 0.23776
CGB chorionic gonadotropin, beta polypeptide 0.237042
RLBP1 retinaldehyde binding protein 1 0.236683
CGB8 chorionic gonadotropin, beta polypeptide 8 0.235249
KDM4B lysine (K)-specific demethylase 4B 0.234174
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 0.231672
HSPA4 heat shock 70kDa protein 4 0.229176
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.227397
SMC4 structural maintenance of chromosomes 4 0.221025
MALL mal, T-cell differentiation protein-like 0.219265
ASCL2 achaete-scute family bHLH transcription factor 2 0.21716
SLC5A6 solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 0.214017
FGD1 FYVE, RhoGEF and PH domain containing 1 0.212106
PTMS parathymosin 0.211933
NIPBL Nipped-B homolog (Drosophila) 0.211587
NMUR2 neuromedin U receptor 2 0.210203
PPM1G protein phosphatase, Mg2+/Mn2+ dependent, 1G 0.207108
NPPA natriuretic peptide A 0.202346
KDM5B lysine (K)-specific demethylase 5B 0.200663
HSF1 heat shock transcription factor 1 0.19733
GFI1B growth factor independent 1B transcription repressor 0.196999
UBE2B ubiquitin-conjugating enzyme E2B 0.191135
MNX1 motor neuron and pancreas homeobox 1 0.190814
WHSC1 Wolf-Hirschhorn syndrome candidate 1 0.190495
CHRNE cholinergic receptor, nicotinic, epsilon (muscle) 0.189539
HDAC4 histone deacetylase 4 0.186242
PGK1 phosphoglycerate kinase 1 0.182122
APRT adenine phosphoribosyltransferase 0.178011
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.177154
SIX5 SIX homeobox 5 0.175745
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 0.174361
EPX eosinophil peroxidase 0.173814
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.173003
HIST1H2AJ histone cluster 1, H2aj 0.171937
HIST1H2AD histone cluster 1, H2ad 0.171937
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.171937
HIST1H2AM histone cluster 1, H2am 0.171937
HIST1H2AH histone cluster 1, H2ah 0.171937
H2AFJ H2A histone family, member J 0.171937
HIST1H1T histone cluster 1, H1t 0.171149
HIST1H2AG histone cluster 1, H2ag 0.170888
HIST1H2AB histone cluster 1, H2ab 0.16935
HIST1H2AE histone cluster 1, H2ae 0.16935
ANKRD2 ankyrin repeat domain 2 (stretch responsive muscle) 0.167611
H2AFB1 H2A histone family, member B1 0.167366
SLC5A5 solute carrier family 5 (sodium/iodide cotransporter), member 5 0.167366
SLC6A7 solute carrier family 6 (neurotransmitter transporter), member 7 0.166884
YEATS4 YEATS domain containing 4 0.166405
H2AFB2 H2A histone family, member B2 0.165231
ING2 inhibitor of growth family, member 2 0.162117
HOXA5 homeobox A5 0.160456
TET1 tet methylcytosine dioxygenase 1 0.159462
TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 0.158882
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.157218
BACE1 beta-site APP-cleaving enzyme 1 0.156863
TTF1 transcription termination factor, RNA polymerase I 0.156513
FGFR1 fibroblast growth factor receptor 1 0.148057
SDF4 stromal cell derived factor 4 0.147575
RHO rhodopsin 0.138049
NPS neuropeptide S 0.135863