endocytic patch Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The part of the cell cortex consisting of an aggregation of proteins that will give rise to an endocytic vesicle. (Gene Ontology, GO_0061645)
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Genes

77 proteins co-occuring with the endocytic patch cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
WAS Wiskott-Aldrich syndrome 1.20653
PLS1 plastin 1 1.12501
FMN1 formin 1 1.11072
C6ORF15 chromosome 6 open reading frame 15 1.00794
PFN4 profilin family, member 4 0.969848
PFN2 profilin 2 0.952096
PFN1 profilin 1 0.931245
EXOC1 exocyst complex component 1 0.911579
SPIRE1 spire-type actin nucleation factor 1 0.865367
AMPH amphiphysin 0.848828
WIPF1 WAS/WASL interacting protein family, member 1 0.842859
TPM1 tropomyosin 1 (alpha) 0.833679
TMOD4 tropomodulin 4 (muscle) 0.769539
FCHO1 FCH domain only 1 0.729732
PLXNB3 plexin B3 0.727941
WIPF3 WAS/WASL interacting protein family, member 3 0.692516
FBP1 fructose-1,6-bisphosphatase 1 0.659482
CCT7 chaperonin containing TCP1, subunit 7 (eta) 0.656895
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.652159
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 0.648721
RMND5A required for meiotic nuclear division 5 homolog A (S. cerevisiae) 0.617557
VPS52 vacuolar protein sorting 52 homolog (S. cerevisiae) 0.577581
NMUR2 neuromedin U receptor 2 0.565923
CDC42 cell division cycle 42 0.560528
EPS15 epidermal growth factor receptor pathway substrate 15 0.543587
AAK1 AP2 associated kinase 1 0.529618
FMNL1 formin-like 1 0.523067
FSCN1 fascin actin-bundling protein 1 0.5149
WDR1 WD repeat domain 1 0.49742
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa 0.493775
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.488519
ITSN1 intersectin 1 (SH3 domain protein) 0.484483
SRC SRC proto-oncogene, non-receptor tyrosine kinase 0.475625
RAP2B RAP2B, member of RAS oncogene family 0.464798
SEPT5 septin 5 0.461998
SAR1A secretion associated, Ras related GTPase 1A 0.457606
ARF3 ADP-ribosylation factor 3 0.457208
RAB1B RAB1B, member RAS oncogene family 0.454418
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.437751
FSCN3 fascin actin-bundling protein 3, testicular 0.43617
ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha 0.424353
FSCN2 fascin actin-bundling protein 2, retinal 0.421997
PLS3 plastin 3 0.414555
TAGLN transgelin 0.385822
GAK cyclin G associated kinase 0.385051
CDR1 cerebellar degeneration-related protein 1, 34kDa 0.366241
HIP1R huntingtin interacting protein 1 related 0.363185
SNX9 sorting nexin 9 0.357467
WIPF2 WAS/WASL interacting protein family, member 2 0.356705
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.335864
MDH1 malate dehydrogenase 1, NAD (soluble) 0.331342
PDXK pyridoxal (pyridoxine, vitamin B6) kinase 0.329837
SEC63 SEC63 homolog (S. cerevisiae) 0.327956
GSN gelsolin 0.32345
NCR3 natural cytotoxicity triggering receptor 3 0.323075
CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta 0.317082
RAB40AL RAB40A, member RAS oncogene family-like 0.307749
BIN1 bridging integrator 1 0.282558
EXOC2 exocyst complex component 2 0.280716
ARHGAP18 Rho GTPase activating protein 18 0.265677
MYO1B myosin IB 0.264215
STARD13 StAR-related lipid transfer (START) domain containing 13 0.26385
NGF nerve growth factor (beta polypeptide) 0.260931
MYH1 myosin, heavy chain 1, skeletal muscle, adult 0.260566
WASL Wiskott-Aldrich syndrome-like 0.257289
CTTN cortactin 0.253653
SLC9A3R2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 0.246769
ARHGAP1 Rho GTPase activating protein 1 0.243879
RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 0.214017
ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 0.212627
MYO5A myosin VA (heavy chain 12, myoxin) 0.209513
IARS isoleucyl-tRNA synthetase 0.189857
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase 0.182122
CARS cysteinyl-tRNA synthetase 0.179459
RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 0.16935
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 0.168101
F12 coagulation factor XII (Hageman factor) 0.160658