dna-directed rna polymerase complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A protein complex that possesses DNA-directed RNA polymerase activity. (Gene Ontology, GO_0000428)
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Genes

301 proteins co-occuring with the dna-directed rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 2.16247
CTR9 CTR9, Paf1/RNA polymerase II complex component 1.94251
CDC73 cell division cycle 73 1.89454
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 1.84634
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 1.81512
LDHB lactate dehydrogenase B 1.5548
PGM1 phosphoglucomutase 1 1.44008
PEPD peptidase D 1.39294
PGM2 phosphoglucomutase 2 1.35594
ACP1 acid phosphatase 1, soluble 1.28356
LAP3 leucine aminopeptidase 3 1.2179
PGM3 phosphoglucomutase 3 1.18954
HIST2H2BF histone cluster 2, H2bf 1.11786
HIST3H2BB histone cluster 3, H2bb 1.11786
HIST1H2BH histone cluster 1, H2bh 1.11786
HIST1H2BD histone cluster 1, H2bd 1.11735
HIST1H2BC histone cluster 1, H2bc 1.11582
HIST1H2BF histone cluster 1, H2bf 1.11582
HIST1H2BA histone cluster 1, H2ba 1.11429
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 1.09798
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 0.979044
ENPEP glutamyl aminopeptidase (aminopeptidase A) 0.945907
INTS6 integrator complex subunit 6 0.939269
GLO1 glyoxalase I 0.924666
CDK8 cyclin-dependent kinase 8 0.923728
SETD1A SET domain containing 1A 0.903673
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 0.874567
LDHA lactate dehydrogenase A 0.866746
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.851124
H3F3B H3 histone, family 3B (H3.3B) 0.846991
H3F3A H3 histone, family 3A 0.846991
PGD phosphogluconate dehydrogenase 0.810276
RPAP2 RNA polymerase II associated protein 2 0.788275
MPI mannose phosphate isomerase 0.777298
INTS7 integrator complex subunit 7 0.773645
CREBBP CREB binding protein 0.764982
INTS12 integrator complex subunit 12 0.752263
INTS1 integrator complex subunit 1 0.736014
CCNC cyclin C 0.727941
HIPK4 homeodomain interacting protein kinase 4 0.714126
INTS4 integrator complex subunit 4 0.710579
MED12 mediator complex subunit 12 0.702626
AK1 adenylate kinase 1 0.673328
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 0.66164
SETD2 SET domain containing 2 0.65345
CITED4 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 0.650439
SUPT7L suppressor of Ty 7 (S. cerevisiae)-like 0.645716
MIR192 microRNA 192 0.642286
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.626057
CHD1 chromodomain helicase DNA binding protein 1 0.624781
CPSF3L cleavage and polyadenylation specific factor 3-like 0.622654
SORD sorbitol dehydrogenase 0.617982
OR1E1 olfactory receptor, family 1, subfamily E, member 1 0.610778
INTS3 integrator complex subunit 3 0.600223
INTS5 integrator complex subunit 5 0.594753
TRPV1 transient receptor potential cation channel, subfamily V, member 1 0.583431
SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) 0.582176
INIP INTS3 and NABP interacting protein 0.579251
ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 0.575495
FUCA1 fucosidase, alpha-L- 1, tissue 0.567169
ABHD16A abhydrolase domain containing 16A 0.564677
SLC39A3 solute carrier family 39 (zinc transporter), member 3 0.560943
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 0.555973
AK2 adenylate kinase 2 0.555559
ENO1 enolase 1, (alpha) 0.555145
PTBP2 polypyrimidine tract binding protein 2 0.553905
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 0.552251
AK3 adenylate kinase 3 0.551838
GRN granulin 0.538649
IL19 interleukin 19 0.518165
TRIP4 thyroid hormone receptor interactor 4 0.516124
OR4Q3 olfactory receptor, family 4, subfamily Q, member 3 0.516124
SESTD1 SEC14 and spectrin domains 1 0.503912
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 0.500664
PEBP1 phosphatidylethanolamine binding protein 1 0.496205
CDK19 cyclin-dependent kinase 19 0.492966
ESD esterase D 0.490539
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.48287
NCOA1 nuclear receptor coactivator 1 0.481258
PRTG protogenin 0.480453
MED13 mediator complex subunit 13 0.48005
GRIA4 glutamate receptor, ionotropic, AMPA 4 0.461998
INTS9 integrator complex subunit 9 0.45641
PIEZO1 piezo-type mechanosensitive ion channel component 1 0.440124
RRP12 ribosomal RNA processing 12 homolog (S. cerevisiae) 0.43696
TRPA1 transient receptor potential cation channel, subfamily A, member 1 0.43617
TPH1 tryptophan hydroxylase 1 0.431041
MED17 mediator complex subunit 17 0.429072
SLC6A16 solute carrier family 6, member 16 0.420036
SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 0.410649
PTER phosphotriesterase related 0.409869
RANBP10 RAN binding protein 10 0.40714
NLRP4 NLR family, pyrin domain containing 4 0.404804
WNK3 WNK lysine deficient protein kinase 3 0.401693
GPT glutamic-pyruvate transaminase (alanine aminotransferase) 0.392388
SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 0.389682
OR5AC2 olfactory receptor, family 5, subfamily AC, member 2 0.388137
SLC39A1 solute carrier family 39 (zinc transporter), member 1 0.385822
MED16 mediator complex subunit 16 0.385822
PXK PX domain containing serine/threonine kinase 0.383509
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 0.380814
STK16 serine/threonine kinase 16 0.37966
PNP purine nucleoside phosphorylase 0.378507
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 0.376586
GRIA3 glutamate receptor, ionotropic, AMPA 3 0.372366
LHX9 LIM homeobox 9 0.371599
PLEKHF1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 0.370833
FOXE3 forkhead box E3 0.369684
SSU72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) 0.357086
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 0.355183
GSR glutathione reductase 0.351002
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 0.348346
OSBP2 oxysterol binding protein 2 0.34645
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.34645
ADK adenosine kinase 0.344556
INPP5J inositol polyphosphate-5-phosphatase J 0.341907
TRPV2 transient receptor potential cation channel, subfamily V, member 2 0.341529
SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 0.336996
SLC6A17 solute carrier family 6 (neutral amino acid transporter), member 17 0.33511
TRRAP transformation/transcription domain-associated protein 0.328708
SLC6A15 solute carrier family 6 (neutral amino acid transporter), member 15 0.324576
DICER1 dicer 1, ribonuclease type III 0.324576
CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 0.32345
OR1J2 olfactory receptor, family 1, subfamily J, member 2 0.322325
RGS9BP regulator of G protein signaling 9 binding protein 0.320077
HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5 0.318953
GSTK1 glutathione S-transferase kappa 1 0.318953
OSBPL8 oxysterol binding protein-like 8 0.318953
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 0.31783
GPBAR1 G protein-coupled bile acid receptor 1 0.316708
GJB5 gap junction protein, beta 5, 31.1kDa 0.314465
JAG2 jagged 2 0.314091
SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 0.313718
CCAR2 cell cycle and apoptosis regulator 2 0.313718
CPSF3 cleavage and polyadenylation specific factor 3, 73kDa 0.312224
DAZAP2 DAZ associated protein 2 0.311478
OSBPL3 oxysterol binding protein-like 3 0.311478
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 0.311105
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.308867
IKZF3 IKAROS family zinc finger 3 (Aiolos) 0.307377
GIT1 G protein-coupled receptor kinase interacting ArfGAP 1 0.307377
CPSF1 cleavage and polyadenylation specific factor 1, 160kDa 0.305515
PRTN3 proteinase 3 0.304027
MED15 mediator complex subunit 15 0.303283
CARM1 coactivator-associated arginine methyltransferase 1 0.302168
ELF5 E74-like factor 5 (ets domain transcription factor) 0.295119
MESP1 mesoderm posterior basic helix-loop-helix transcription factor 1 0.295119
PCP2 Purkinje cell protein 2 0.295119
GLA galactosidase, alpha 0.289938
HIPK1 homeodomain interacting protein kinase 1 0.289569
NPW neuropeptide W 0.286983
WDR61 WD repeat domain 61 0.286614
HEXA hexosaminidase A (alpha polypeptide) 0.285507
CDK9 cyclin-dependent kinase 9 0.284401
F13B coagulation factor XIII, B polypeptide 0.27998
NABP2 nucleic acid binding protein 2 0.278877
GBA2 glucosidase, beta (bile acid) 2 0.277406
SPIB Spi-B transcription factor (Spi-1/PU.1 related) 0.277038
VIP vasoactive intestinal peptide 0.273734
CPSF2 cleavage and polyadenylation specific factor 2, 100kDa 0.270068
HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 0.266408
PHF6 PHD finger protein 6 0.266042
CKB creatine kinase, brain 0.266042
PIGC phosphatidylinositol glycan anchor biosynthesis, class C 0.26166
SART1 squamous cell carcinoma antigen recognized by T cells 0.258745
MDH1 malate dehydrogenase 1, NAD (soluble) 0.249302
G6PC2 glucose-6-phosphatase, catalytic, 2 0.249302
GPI glucose-6-phosphate isomerase 0.244601
RANBP9 RAN binding protein 9 0.24424
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 0.243519
AFF1 AF4/FMR2 family, member 1 0.243158
MIR21 microRNA 21 0.240996
ADORA2B adenosine A2b receptor 0.238119
INS insulin 0.237401
RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 0.232386
STAM2 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 0.229532
RNF20 ring finger protein 20, E3 ubiquitin protein ligase 0.229532
G6PC3 glucose 6 phosphatase, catalytic, 3 0.225267
PYCR1 pyrroline-5-carboxylate reductase 1 0.223497
AFM afamin 0.218212
TRAPPC10 trafficking protein particle complex 10 0.214366
HIPK3 homeodomain interacting protein kinase 3 0.214366
TUBG1 tubulin, gamma 1 0.212974
KAT2B K(lysine) acetyltransferase 2B 0.21228
RGS7BP regulator of G-protein signaling 7 binding protein 0.211933
HAGH hydroxyacylglutathione hydrolase 0.211933
PAX9 paired box 9 0.210894
AFF4 AF4/FMR2 family, member 4 0.210894
TPSG1 tryptase gamma 1 0.203699
SFTPA2 surfactant protein A2 0.199325
SMAD5 SMAD family member 5 0.198991
TADA3 transcriptional adaptor 3 0.198325
ZFP36 ZFP36 ring finger protein 0.195025
CLCNKB chloride channel, voltage-sensitive Kb 0.190814
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 0.187646
SOD2 superoxide dismutase 2, mitochondrial 0.18516
G6PD glucose-6-phosphate dehydrogenase 0.184853
LHX2 LIM homeobox 2 0.184853
PKM pyruvate kinase, muscle 0.183328
TRPV4 transient receptor potential cation channel, subfamily V, member 4 0.182122
RBBP9 retinoblastoma binding protein 9 0.180339
HCRTR1 hypocretin (orexin) receptor 1 0.179167
CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 0.179167
TP53 tumor protein p53 0.178877
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4 0.178877
ANKK1 ankyrin repeat and kinase domain containing 1 0.17687
MAF1 MAF1 homolog (S. cerevisiae) 0.174911
PRKCA protein kinase C, alpha 0.169859
GUK1 guanylate kinase 1 0.168598
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 0.168598
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.165932
FOXO1 forkhead box O1 0.165697
SHD Src homology 2 domain containing transforming protein D 0.1632
CYTH2 cytohesin 2 0.161275
GAS1 growth arrest-specific 1 0.161068
CRH corticotropin releasing hormone 0.160053
ACO2 aconitase 2, mitochondrial 0.159658
NPY neuropeptide Y 0.159268
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.158502
PEG3 paternally expressed 3 0.157578
GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 0.140447
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.137794
ACO1 aconitase 1, soluble 0.136577
ADA adenosine deaminase 0.136168
HBD hemoglobin, delta 0.134626
GPD2 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 0.134594
MIER1 mesoderm induction early response 1, transcriptional regulator 0.134573
LALBA lactalbumin, alpha- 0.134284
A2M alpha-2-macroglobulin 0.134153
TPI1 triosephosphate isomerase 1 0.133909
TGM1 transglutaminase 1 0.133875
GANC glucosidase, alpha; neutral C 0.133425
SCN2A sodium channel, voltage gated, type II alpha subunit 0.133283
C5AR1 complement component 5a receptor 1 0.133271
NT5C 5', 3'-nucleotidase, cytosolic 0.132955
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.132955
BDH1 3-hydroxybutyrate dehydrogenase, type 1 0.132366
ENO2 enolase 2 (gamma, neuronal) 0.132333
ABHD14A abhydrolase domain containing 14A 0.132069
PGK1 phosphoglycerate kinase 1 0.131988
RAP1B RAP1B, member of RAS oncogene family 0.131804
GRM7 glutamate receptor, metabotropic 7 0.131673
BDKRB2 bradykinin receptor B2 0.131631
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.131334
HBB hemoglobin, beta 0.131072
TALDO1 transaldolase 1 0.130653
CFB complement factor B 0.130234
CLPS colipase, pancreatic 0.13017
GPANK1 G patch domain and ankyrin repeats 1 0.130074
FGF19 fibroblast growth factor 19 0.13005
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 0.129599
FH fumarate hydratase 0.128962
PAH phenylalanine hydroxylase 0.128748
CTSE cathepsin E 0.128455
NANOG Nanog homeobox 0.128306
STAB2 stabilin 2 0.128288
TK1 thymidine kinase 1, soluble 0.128194
CDX1 caudal type homeobox 1 0.127828
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.127572
PAPPA pregnancy-associated plasma protein A, pappalysin 1 0.127472
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.127391
EOMES eomesodermin 0.127381
B2M beta-2-microglobulin 0.12732
TRPM3 transient receptor potential cation channel, subfamily M, member 3 0.127104
GNB5 guanine nucleotide binding protein (G protein), beta 5 0.126999
CRK v-crk avian sarcoma virus CT10 oncogene homolog 0.126702
WNK4 WNK lysine deficient protein kinase 4 0.126529
BIK BCL2-interacting killer (apoptosis-inducing) 0.126486
ALB albumin 0.126254
TRPM8 transient receptor potential cation channel, subfamily M, member 8 0.126006
STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 0.125834
CDK11A cyclin-dependent kinase 11A 0.125717
TBP TATA box binding protein 0.125589
XPO5 exportin 5 0.125577
CCNH cyclin H 0.125529
DRD2 dopamine receptor D2 0.125387
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.12529
ERG v-ets avian erythroblastosis virus E26 oncogene homolog 0.125193
PIF1 PIF1 5'-to-3' DNA helicase 0.125095
MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 0.125095
PPP1R1B protein phosphatase 1, regulatory (inhibitor) subunit 1B 0.124984
SMAD9 SMAD family member 9 0.124947
LMX1B LIM homeobox transcription factor 1, beta 0.124898
FOS FBJ murine osteosarcoma viral oncogene homolog 0.124872
CCR2 chemokine (C-C motif) receptor 2 0.124746
CDK4 cyclin-dependent kinase 4 0.124734
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.10784
HTRA1 HtrA serine peptidase 1 0.107055
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.107055
CA2 carbonic anhydrase II 0.105636
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 0.104072
GC group-specific component (vitamin D binding protein) 0.104034
MMP11 matrix metallopeptidase 11 0.103455
AHSG alpha-2-HS-glycoprotein 0.103066
ACP2 acid phosphatase 2, lysosomal 0.102747
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.102107
DSPP dentin sialophosphoprotein 0.101247
GRIA2 glutamate receptor, ionotropic, AMPA 2 0.10075
SLC17A5 solute carrier family 17 (acidic sugar transporter), member 5 0.100029
CSN1S1 casein alpha s1 0.099945
HPX hemopexin 0.098991