dentate gyrus mossy fiber Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Distinctive, unmyelinated axons produced by granule cells. (Gene Ontology, GO_0044302)
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Genes

60 proteins co-occuring with the dentate gyrus mossy fiber cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ULK3 unc-51 like kinase 3 1.13881
CNTN2 contactin 2 (axonal) 0.971297
PITPNM2 phosphatidylinositol transfer protein, membrane-associated 2 0.969366
CALB1 calbindin 1, 28kDa 0.89672
PVALB parvalbumin 0.874567
GAP43 growth associated protein 43 0.86123
PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa 0.827712
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.818993
PDYN prodynorphin 0.800187
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.775014
CCK cholecystokinin 0.740515
ZIC2 Zic family member 2 0.703507
GDF7 growth differentiation factor 7 0.681155
ZIC1 Zic family member 1 0.67463
LSAMP limbic system-associated membrane protein 0.65905
BDNF brain-derived neurotrophic factor 0.638861
NTM neurotrimin 0.637578
SCN10A sodium channel, voltage gated, type X alpha subunit 0.627761
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 0.616709
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.602331
ULK1 unc-51 like autophagy activating kinase 1 0.567169
SYNPR synaptoporin 0.561772
SCN2A sodium channel, voltage gated, type II alpha subunit 0.503099
CAMK4 calcium/calmodulin-dependent protein kinase IV 0.483273
LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 0.459602
PAX2 paired box 2 0.454816
MEIS1 Meis homeobox 1 0.45004
CALB2 calbindin 2 0.401304
RAB40AL RAB40A, member RAS oncogene family-like 0.400139
SST somatostatin 0.392001
PROX1 prospero homeobox 1 0.381584
BTC betacellulin 0.378891
HES5 hes family bHLH transcription factor 5 0.375818
GRIK1 glutamate receptor, ionotropic, kainate 1 0.349863
KCNA4 potassium channel, voltage gated shaker related subfamily A, member 4 0.349863
KARS lysyl-tRNA synthetase 0.346071
PHF1 PHD finger protein 1 0.333602
PFN1 profilin 1 0.330966
NGF nerve growth factor (beta polypeptide) 0.329461
FGF8 fibroblast growth factor 8 (androgen-induced) 0.321575
BCAR1 breast cancer anti-estrogen resistance 1 0.313718
KCNC1 potassium channel, voltage gated Shaw related subfamily C, member 1 0.309986
CA13 carbonic anhydrase XIII 0.297713
VLDLR very low density lipoprotein receptor 0.296601
GRM2 glutamate receptor, metabotropic 2 0.294748
BMP6 bone morphogenetic protein 6 0.273734
CYLD cylindromatosis (turban tumor syndrome) 0.264946
OLIG2 oligodendrocyte lineage transcription factor 2 0.254743
CCND2 cyclin D2 0.250751
NTF4 neurotrophin 4 0.241716
WNT1 wingless-type MMTV integration site family, member 1 0.239916
DBN1 drebrin 1 0.226331
BSN bassoon presynaptic cytomatrix protein 0.222083
GRIA4 glutamate receptor, ionotropic, AMPA 4 0.217861
RELN reelin 0.214366
JAG1 jagged 1 0.196999
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.183935
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 0.174911
CRK v-crk avian sarcoma virus CT10 oncogene homolog 0.171673
FOS FBJ murine osteosarcoma viral oncogene homolog 0.159658