dense body Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description An electron dense body which may contain granules. (Gene Ontology, GO_0097433)
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Genes

113 proteins co-occuring with the dense body cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ACPP acid phosphatase, prostate 1.76496
FTL ferritin, light polypeptide 0.958789
FTH1 ferritin, heavy polypeptide 1 0.956874
PPBP pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) 0.926543
PF4 platelet factor 4 0.863068
TTN titin 0.827712
PALLD palladin, cytoskeletal associated protein 0.813487
ROR2 receptor tyrosine kinase-like orphan receptor 2 0.810735
LPP LIM domain containing preferred translocation partner in lipoma 0.724812
UBAC1 UBA domain containing 1 0.662503
LMOD1 leiomodin 1 (smooth muscle) 0.660776
TG thyroglobulin 0.629892
VCL vinculin 0.598538
ARSH arylsulfatase family, member H 0.588456
BCS1L BC1 (ubiquinol-cytochrome c reductase) synthesis-like 0.587199
GUSB glucuronidase, beta 0.561772
CD63 CD63 molecule 0.551838
ACTN1 actinin, alpha 1 0.541529
HPS3 Hermansky-Pudlak syndrome 3 0.535361
UBL5 ubiquitin-like 5 0.51327
CTSD cathepsin D 0.50879
NEB nebulin 0.4958
CTSS cathepsin S 0.484886
LYZ lysozyme 0.482064
POMC proopiomelanocortin 0.480453
DMD dystrophin 0.458803
CALD1 caldesmon 1 0.450836
ZRANB2 zinc finger, RAN-binding domain containing 2 0.450438
CTSB cathepsin B 0.450438
GYPC glycophorin C (Gerbich blood group) 0.449245
CD68 CD68 molecule 0.445672
ARMC9 armadillo repeat containing 9 0.444878
REN renin 0.441708
ALPPL2 alkaline phosphatase, placental-like 2 0.439333
ALPL alkaline phosphatase, liver/bone/kidney 0.438937
ALPP alkaline phosphatase, placental 0.438542
PARVA parvin, alpha 0.430253
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 0.422389
HLA-A major histocompatibility complex, class I, A 0.42082
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 0.42082
INS insulin 0.419252
SULT1A4 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 0.415337
DCAF7 DDB1 and CUL4 associated factor 7 0.398199
HPS6 Hermansky-Pudlak syndrome 6 0.377738
F8 coagulation factor VIII, procoagulant component 0.376586
CAT catalase 0.374666
HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 0.37045
DPP7 dipeptidyl-peptidase 7 0.368153
VWF von Willebrand factor 0.366623
ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) 0.361659
HPS5 Hermansky-Pudlak syndrome 5 0.343799
CALCA calcitonin-related polypeptide alpha 0.337373
CD34 CD34 molecule 0.332095
SULT1A1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 0.324201
NPB neuropeptide B 0.322325
NT5E 5'-nucleotidase, ecto (CD73) 0.320826
PROS2P protein S (beta) pseudogene 0.314465
GCG glucagon 0.311851
ZYX zyxin 0.307749
ACTG1 actin gamma 1 0.301797
CHAT choline O-acetyltransferase 0.29994
RGN regucalcin 0.298084
MB myoglobin 0.296601
KCNK10 potassium channel, two pore domain subfamily K, member 10 0.291787
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 0.289569
PGM1 phosphoglucomutase 1 0.285507
VPS33B vacuolar protein sorting 33 homolog B (yeast) 0.278141
SELP selectin P (granule membrane protein 140kDa, antigen CD62) 0.273734
LXN latexin 0.268603
HSPB7 heat shock 27kDa protein family, member 7 (cardiovascular) 0.268603
SYP synaptophysin 0.266774
BLOC1S4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino 0.25547
TPM1 tropomyosin 1 (alpha) 0.254743
KIAA0101 KIAA0101 0.245685
ACTB actin, beta 0.242797
WRNIP1 Werner helicase interacting protein 1 0.240996
CCL15 chemokine (C-C motif) ligand 15 0.23776
ENO2 enolase 2 (gamma, neuronal) 0.237042
ATAD2 ATPase family, AAA domain containing 2 0.236324
ACP2 acid phosphatase 2, lysosomal 0.235249
CD226 CD226 molecule 0.230958
ANKK1 ankyrin repeat and kinase domain containing 1 0.218914
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.215063
TYRP1 tyrosinase-related protein 1 0.21228
GFAP glial fibrillary acidic protein 0.21228
CRYAB crystallin, alpha B 0.211587
VASP vasodilator-stimulated phosphoprotein 0.208481
ITGAX integrin, alpha X (complement component 3 receptor 4 subunit) 0.203361
TPM4 tropomyosin 4 0.199659
B3GAT1 beta-1,3-glucuronyltransferase 1 0.198658
FN1 fibronectin 1 0.198325
PIWIL1 piwi-like RNA-mediated gene silencing 1 0.196339
DUOXA1 dual oxidase maturation factor 1 0.19307
FLNC filamin C, gamma 0.191135
KCNK2 potassium channel, two pore domain subfamily K, member 2 0.187333
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 0.186708
CSN1S1 casein alpha s1 0.186397
CBS cystathionine-beta-synthase 0.182723
EML1 echinoderm microtubule associated protein like 1 0.182422
TAC1 tachykinin, precursor 1 0.174361
CSH2 chorionic somatomammotropin hormone 2 0.173003
TH tyrosine hydroxylase 0.173003
CNOT8 CCR4-NOT transcription complex, subunit 8 0.171673
SLC38A2 solute carrier family 38, member 2 0.170371
TRIP6 thyroid hormone receptor interactor 6 0.167611
UNK unkempt family zinc finger 0.167125
MYH11 myosin, heavy chain 11, smooth muscle 0.16233
HEXA hexosaminidase A (alpha polypeptide) 0.161693
FERMT2 fermitin family member 2 0.160863
CD37 CD37 molecule 0.160456
ACHE acetylcholinesterase (Yt blood group) 0.158882
NEBL nebulette 0.15776
SFTPB surfactant protein B 0.157039