dendritic tree Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The entire complement of dendrites for a neuron, consisting of each primary dendrite and all its branches. (Gene Ontology, GO_0097447)
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Genes

137 proteins co-occuring with the dendritic tree cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CALB1 calbindin 1, 28kDa 1.39573
PVALB parvalbumin 1.26498
TSPAN5 tetraspanin 5 1.17363
CALB2 calbindin 2 1.13574
ARHGAP33 Rho GTPase activating protein 33 1.09696
BDNF brain-derived neurotrophic factor 0.850206
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 0.835974
DLG2 discs, large homolog 2 (Drosophila) 0.806148
RICTOR RPTOR independent companion of MTOR, complex 2 0.770907
ABI3BP ABI family, member 3 (NESH) binding protein 0.755437
YIF1B Yip1 interacting factor homolog B (S. cerevisiae) 0.747285
CA4 carbonic anhydrase IV 0.727494
GRIA4 glutamate receptor, ionotropic, AMPA 4 0.699543
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.689451
CHAT choline O-acetyltransferase 0.678978
TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 0.675499
RTN4RL2 reticulon 4 receptor-like 2 0.666827
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 0.665529
GRM1 glutamate receptor, metabotropic 1 0.662072
TH tyrosine hydroxylase 0.655172
CTBP2 C-terminal binding protein 2 0.640573
FAT3 FAT atypical cadherin 3 0.634159
TAC1 tachykinin, precursor 1 0.626909
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.620954
ETV3 ets variant 3 0.617133
PAPOLB poly(A) polymerase beta (testis specific) 0.605706
MAP2 microtubule-associated protein 2 0.59896
DTNA dystrobrevin, alpha 0.595593
CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 0.595593
KCNC3 potassium channel, voltage gated Shaw related subfamily C, member 3 0.585942
KCNIP2 Kv channel interacting protein 2 0.582594
SDF4 stromal cell derived factor 4 0.575912
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.572994
PPP1R9B protein phosphatase 1, regulatory subunit 9B 0.569248
NGF nerve growth factor (beta polypeptide) 0.566338
DCX doublecortin 0.564262
RELN reelin 0.555973
TRIM44 tripartite motif containing 44 0.537005
SLC4A10 solute carrier family 4, sodium bicarbonate transporter, member 10 0.53454
NPY neuropeptide Y 0.52716
OPN4 opsin 4 0.523476
SYNGAP1 synaptic Ras GTPase activating protein 1 0.519389
YIPF5 Yip1 domain family, member 5 0.515716
UNC5C unc-5 homolog C (C. elegans) 0.510418
MSTO1 misato 1, mitochondrial distribution and morphology regulator 0.50879
LRRC4C leucine rich repeat containing 4C 0.506757
CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1 0.505537
LRRC4 leucine rich repeat containing 4 0.503099
RORA RAR-related orphan receptor A 0.49418
FEZF2 FEZ family zinc finger 2 0.493371
SST somatostatin 0.4865
CSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C) 0.484886
CUX2 cut-like homeobox 2 0.47844
PDE10A phosphodiesterase 10A 0.47442
NTNG2 netrin G2 0.472412
KALRN kalirin, RhoGEF kinase 0.468802
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.464798
SACS sacsin molecular chaperone 0.461599
OPLAH 5-oxoprolinase (ATP-hydrolysing) 0.458803
SYP synaptophysin 0.452427
ACHE acetylcholinesterase (Yt blood group) 0.441708
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 0.431041
FOXG1 forkhead box G1 0.421212
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 0.416511
EMX1 empty spiracles homeobox 1 0.415728
GPHN gephyrin 0.403248
RIMS2 regulating synaptic membrane exocytosis 2 0.399363
NPS neuropeptide S 0.395098
RORB RAR-related orphan receptor B 0.391228
SON SON DNA binding protein 0.386593
LPAR1 lysophosphatidic acid receptor 1 0.385436
POMT1 protein-O-mannosyltransferase 1 0.381584
KCNC4 potassium channel, voltage gated Shaw related subfamily C, member 4 0.377738
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit 0.376202
OPHN1 oligophrenin 1 0.372749
TBR1 T-box, brain, 1 0.367006
LSAMP limbic system-associated membrane protein 0.362422
SNX17 sorting nexin 17 0.36204
CRH corticotropin releasing hormone 0.361277
COX5A cytochrome c oxidase subunit Va 0.349863
PTN pleiotrophin 0.348725
CCK cholecystokinin 0.344178
RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1 0.343799
NTM neurotrimin 0.343799
HPCA hippocalcin 0.341151
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 0.340017
NGFR nerve growth factor receptor 0.340017
CA13 carbonic anhydrase XIII 0.338128
SCGN secretagogin, EF-hand calcium binding protein 0.33511
PTF1A pancreas specific transcription factor, 1a 0.327956
NXN nucleoredoxin 0.314839
SPTBN2 spectrin, beta, non-erythrocytic 2 0.305888
NTF3 neurotrophin 3 0.302912
NTF4 neurotrophin 4 0.29586
SHKBP1 SH3KBP1 binding protein 1 0.287721
ICAM5 intercellular adhesion molecule 5, telencephalin 0.285507
SEMG1 semenogelin I 0.284032
FOXD3 forkhead box D3 0.273
PORCN porcupine homolog (Drosophila) 0.262755
GADD45G growth arrest and DNA-damage-inducible, gamma 0.260566
DCPS decapping enzyme, scavenger 0.257289
TRPC3 transient receptor potential cation channel, subfamily C, member 3 0.256561
ASMT acetylserotonin O-methyltransferase 0.255834
ACD adrenocortical dysplasia homolog (mouse) 0.24894
CABP1 calcium binding protein 1 0.247492
SETD7 SET domain containing (lysine methyltransferase) 7 0.24713
UNK unkempt family zinc finger 0.241356
KLF6 Kruppel-like factor 6 0.240636
LGALS4 lectin, galactoside-binding, soluble, 4 0.239557
CDC42 cell division cycle 42 0.217861
CRHR2 corticotropin releasing hormone receptor 2 0.217511
CTNND2 catenin (cadherin-associated protein), delta 2 0.211933
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1 0.206766
AFG3L2 AFG3-like AAA ATPase 2 0.203361
EBF1 early B-cell factor 1 0.198991
NTS neurotensin 0.198325
PNMT phenylethanolamine N-methyltransferase 0.194698
RAMP1 receptor (G protein-coupled) activity modifying protein 1 0.193719
GRM5 glutamate receptor, metabotropic 5 0.193394
NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa 0.193394
SYN1 synapsin I 0.186708
SDC3 syndecan 3 0.184241
SLC1A6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 0.182122
CD177 CD177 molecule 0.182122
CNTF ciliary neurotrophic factor 0.179459
ATXN1 ataxin 1 0.177439
MNX1 motor neuron and pancreas homeobox 1 0.174911
VIP vasoactive intestinal peptide 0.174087
CUX1 cut-like homeobox 1 0.17141
SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1 0.16935
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.16342
GRM7 glutamate receptor, metabotropic 7 0.16298
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.160254
MECP2 methyl CpG binding protein 2 0.160053
NPAT nuclear protein, ataxia-telangiectasia locus 0.159658
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.15776
RIMS1 regulating synaptic membrane exocytosis 1 0.156688