cytoskeletal calyx Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A large cytoskeletal structure located at the posterior end of the perinuclear theca of a mammalian sperm head. The nucleus is tightly associated with the calyx, which contains calicin and basic cylicin proteins. (Gene Ontology, GO_0033150)
Similar Terms
Downloads & Tools

Genes

90 proteins co-occuring with the cytoskeletal calyx cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CCIN calicin 1.62
CYLC1 cylicin, basic protein of sperm head cytoskeleton 1 1.59488
KCNQ4 potassium channel, voltage gated KQT-like subfamily Q, member 4 1.14955
PPP1R12A protein phosphatase 1, regulatory subunit 12A 1.07968
CYLC2 cylicin, basic protein of sperm head cytoskeleton 2 0.966474
COL26A1 collagen, type XXVI, alpha 1 0.932187
CALB2 calbindin 2 0.840105
EPHB2 EPH receptor B2 0.776384
MKRN1 makorin ring finger protein 1 0.751357
LHX1 LIM homeobox 1 0.691202
CNTN5 contactin 5 0.679849
CHRM3 cholinergic receptor, muscarinic 3 0.638005
HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 0.611201
PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase 0.610355
KCNK4 potassium channel, two pore domain subfamily K, member 4 0.606128
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 0.605284
ANAPC4 anaphase promoting complex subunit 4 0.596435
KCNK10 potassium channel, two pore domain subfamily K, member 10 0.585942
EPHB3 EPH receptor B3 0.568001
PAX8 paired box 8 0.561772
PVALB parvalbumin 0.551838
CRLF1 cytokine receptor-like factor 1 0.54606
MKKS McKusick-Kaufman syndrome 0.545236
WASF3 WAS protein family, member 3 0.543176
MEGF6 multiple EGF-like-domains 6 0.539883
RAB3A RAB3A, member RAS oncogene family 0.535772
HNF1B HNF1 homeobox B 0.527979
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.525113
GRM2 glutamate receptor, metabotropic 2 0.523476
DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 0.515308
NTRK2 neurotrophic tyrosine kinase, receptor, type 2 0.512047
ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 0.507977
SYP synaptophysin 0.501881
SIM1 single-minded family bHLH transcription factor 1 0.501476
CPSF4 cleavage and polyadenylation specific factor 4, 30kDa 0.490539
BSN bassoon presynaptic cytomatrix protein 0.489327
KCNK2 potassium channel, two pore domain subfamily K, member 2 0.465198
LEO1 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 0.441312
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 0.430253
CALB1 calbindin 1, 28kDa 0.427497
ITM2B integral membrane protein 2B 0.415337
ERG v-ets avian erythroblastosis virus E26 oncogene homolog 0.401304
SYN1 synapsin I 0.395098
OTOF otoferlin 0.394323
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 0.385051
HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 0.38428
ABAT 4-aminobutyrate aminotransferase 0.372366
PAX2 paired box 2 0.371982
ADCY9 adenylate cyclase 9 0.360896
HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 0.346071
ARG2 arginase 2 0.345692
TCF4 transcription factor 4 0.333979
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.31783
SIK1 salt-inducible kinase 1 0.317082
UNC13A unc-13 homolog A (C. elegans) 0.315586
GRM4 glutamate receptor, metabotropic 4 0.29586
EXOC7 exocyst complex component 7 0.285876
CHAT choline O-acetyltransferase 0.275936
NOS1 nitric oxide synthase 1 (neuronal) 0.273
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 0.271533
KRT5 keratin 5, type II 0.271167
GLI3 GLI family zinc finger 3 0.264581
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 0.256197
EFNB2 ephrin-B2 0.24713
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 0.238119
ZNF135 zinc finger protein 135 0.233459
FBN2 fibrillin 2 0.223497
AMACR alpha-methylacyl-CoA racemase 0.222436
PNMA2 paraneoplastic Ma antigen 2 0.221378
KCNA1 potassium channel, voltage gated shaker related subfamily A, member 1 0.216111
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.211933
HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2 0.21124
NPS neuropeptide S 0.207794
PKD1P6 polycystic kidney disease 1 (autosomal dominant) pseudogene 6 0.207451
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 0.20574
AHSG alpha-2-HS-glycoprotein 0.195025
LCN2 lipocalin 2 0.1921
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 0.181823
UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7 0.179752
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 0.178588
UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 0.178011
UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 0.177439
UGT1A5 UDP glucuronosyltransferase 1 family, polypeptide A5 0.177439
KRT7 keratin 7, type II 0.175466
UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 0.173814
UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9 0.172468
CD27 CD27 molecule 0.172201
NTF4 neurotrophin 4 0.171937
DNM1 dynamin 1 0.161484
TH tyrosine hydroxylase 0.158315