cytoplasmic microtubule Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any microtubule in the cytoplasm of a cell. (Gene Ontology, GO_0005881)
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Genes

241 proteins co-occuring with the cytoplasmic microtubule cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
TUBA1A tubulin, alpha 1a 1.63182
DCTN1 dynactin 1 1.45251
MAP4 microtubule-associated protein 4 1.43331
NUMA1 nuclear mitotic apparatus protein 1 1.30604
MAP2 microtubule-associated protein 2 1.21531
MAPT microtubule-associated protein tau 1.1097
TUBA1C tubulin, alpha 1c 1.04833
CLIP1 CAP-GLY domain containing linker protein 1 1.04381
DNAH9 dynein, axonemal, heavy chain 9 0.996613
CLASP1 cytoplasmic linker associated protein 1 0.995632
KIF18B kinesin family member 18B 0.983419
MISP mitotic spindle positioning 0.944956
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.898109
KIF24 kinesin family member 24 0.883782
TUBA3C tubulin, alpha 3c 0.874107
TUBA3D tubulin, alpha 3d 0.874107
RP1 retinitis pigmentosa 1 (autosomal dominant) 0.873186
DNAH14 dynein, axonemal, heavy chain 14 0.868586
DNAH12 dynein, axonemal, heavy chain 12 0.868586
DNAH5 dynein, axonemal, heavy chain 5 0.836892
MAPRE1 microtubule-associated protein, RP/EB family, member 1 0.806148
PSORS1C2 psoriasis susceptibility 1 candidate 2 0.804313
PCNT pericentrin 0.802479
GTF2IRD2 GTF2I repeat domain containing 2 0.788733
LEFTY1 left-right determination factor 1 0.755891
CIB3 calcium and integrin binding family member 3 0.745477
CCP110 centriolar coiled coil protein 110kDa 0.721242
SPAG8 sperm associated antigen 8 0.706156
BBS4 Bardet-Biedl syndrome 4 0.698223
CNTLN centlein, centrosomal protein 0.685954
DCTN2 dynactin 2 (p50) 0.671593
KIF23 kinesin family member 23 0.669425
MAP9 microtubule-associated protein 9 0.666394
APC adenomatous polyposis coli 0.662503
LEFTY2 left-right determination factor 2 0.659482
EML3 echinoderm microtubule associated protein like 3 0.65905
TUBGCP2 tubulin, gamma complex associated protein 2 0.656033
FMN1 formin 1 0.63715
ANLN anillin, actin binding protein 0.609932
KIF11 kinesin family member 11 0.609509
TTLL9 tubulin tyrosine ligase-like family member 9 0.596855
KIF5B kinesin family member 5B 0.589295
GORASP2 golgi reassembly stacking protein 2, 55kDa 0.588875
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) 0.573828
KIF25 kinesin family member 25 0.572162
PLK1 polo-like kinase 1 0.567169
TUBB tubulin, beta class I 0.563017
NIN ninein (GSK3B interacting protein) 0.552251
CYHR1 cysteine/histidine-rich 1 0.548535
TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) 0.54771
AMT aminomethyltransferase 0.545236
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.543587
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.543176
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.542764
WNT8A wingless-type MMTV integration site family, member 8A 0.53454
APC2 adenomatosis polyposis coli 2 0.52225
RANBP10 RAN binding protein 10 0.51327
GTF2IRD1 GTF2I repeat domain containing 1 0.50879
TTLL1 tubulin tyrosine ligase-like family member 1 0.505537
PRC1 protein regulator of cytokinesis 1 0.491348
FIGN fidgetin 0.486096
AURKB aurora kinase B 0.484483
CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.468401
KIF9 kinesin family member 9 0.465198
CEP97 centrosomal protein 97kDa 0.443292
GAS8 growth arrest-specific 8 0.43696
RAN RAN, member RAS oncogene family 0.436565
TTL tubulin tyrosine ligase 0.426711
PARD6A par-6 family cell polarity regulator alpha 0.422782
ANO5 anoctamin 5 0.422389
ECT2 epithelial cell transforming 2 0.415728
KANK1 KN motif and ankyrin repeat domains 1 0.415337
CDK1 cyclin-dependent kinase 1 0.394323
GPR176 G protein-coupled receptor 176 0.389296
MAD2L1P1 MAD2 mitotic arrest deficient-like 1 (yeast) pseudogene 1 0.377738
SSNA1 Sjogren syndrome nuclear autoantigen 1 0.377354
CC2D2A coiled-coil and C2 domain containing 2A 0.375818
CLDN11 claudin 11 0.365477
PDXP pyridoxal (pyridoxine, vitamin B6) phosphatase 0.365095
SIVA1 SIVA1, apoptosis-inducing factor 0.361659
KIF21A kinesin family member 21A 0.357467
TUBE1 tubulin, epsilon 1 0.353282
NUSAP1 nucleolar and spindle associated protein 1 0.350622
USP4 ubiquitin specific peptidase 4 (proto-oncogene) 0.341907
KIF13B kinesin family member 13B 0.338128
MKKS McKusick-Kaufman syndrome 0.335487
WNT5B wingless-type MMTV integration site family, member 5B 0.329084
PANX2 pannexin 2 0.320451
MAP7 microtubule-associated protein 7 0.319328
INSC inscuteable homolog (Drosophila) 0.318953
RUVBL1 RuvB-like AAA ATPase 1 0.301054
UBIAD1 UbiA prenyltransferase domain containing 1 0.29994
KIF3A kinesin family member 3A 0.295489
NF1 neurofibromin 1 0.289938
STMN1 stathmin 1 0.287721
MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 0.287352
TRAPPC9 trafficking protein particle complex 9 0.285138
IFT52 intraflagellar transport 52 0.283295
STRBP spermatid perinuclear RNA binding protein 0.279245
DIAPH2 diaphanous-related formin 2 0.278141
MARK2 MAP/microtubule affinity-regulating kinase 2 0.277774
SPAG5 sperm associated antigen 5 0.277774
BOLL boule-like RNA-binding protein 0.277038
ATXN3 ataxin 3 0.2708
CCNB1 cyclin B1 0.268603
SF3A2 splicing factor 3a, subunit 2, 66kDa 0.262755
SHD Src homology 2 domain containing transforming protein D 0.24894
ATN1 atrophin 1 0.24894
FTL ferritin, light polypeptide 0.247854
MAST4 microtubule associated serine/threonine kinase family member 4 0.24713
FTH1 ferritin, heavy polypeptide 1 0.246046
BBS1 Bardet-Biedl syndrome 1 0.245323
CCDC62 coiled-coil domain containing 62 0.243879
SEPT5 septin 5 0.242437
FMN2 formin 2 0.234891
CRMP1 collapsin response mediator protein 1 0.234891
GOSR2 golgi SNAP receptor complex member 2 0.230245
TMPRSS11D transmembrane protease, serine 11D 0.228819
TXNL1 thioredoxin-like 1 0.226331
MAP3K11 mitogen-activated protein kinase kinase kinase 11 0.225267
EVL Enah/Vasp-like 0.224558
RTN1 reticulon 1 0.213669
CEP135 centrosomal protein 135kDa 0.21228
GOLGA4 golgin A4 0.206766
ARL2 ADP-ribosylation factor-like 2 0.204039
REEP5 receptor accessory protein 5 0.198991
ICMT isoprenylcysteine carboxyl methyltransferase 0.196999
VPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) 0.19601
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 0.194698
MAP6 microtubule-associated protein 6 0.186708
C5AR1 complement component 5a receptor 1 0.185469
TSPO translocator protein (18kDa) 0.185469
PAK2 p21 protein (Cdc42/Rac)-activated kinase 2 0.184547
PAK4 p21 protein (Cdc42/Rac)-activated kinase 4 0.183935
PPFIA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 0.179459
MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 0.178588
CETN1 centrin, EF-hand protein, 1 0.175745
KIF3B kinesin family member 3B 0.172201
GTF2I general transcription factor IIi 0.171149
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 0.170114
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 0.169604
NUF2 NUF2, NDC80 kinetochore complex component 0.167125
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.166643
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.166643
NMS neuromedin S 0.16342
TEKT2 tektin 2 (testicular) 0.158835
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.158692
CNOT1 CCR4-NOT transcription complex, subunit 1 0.15776
IFT43 intraflagellar transport 43 0.146648
NME5 NME/NM23 family member 5 0.143009
ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa 0.14229
CCDC114 coiled-coil domain containing 114 0.141896
NEK1 NIMA-related kinase 1 0.141864
NEK11 NIMA-related kinase 11 0.141755
TEKT4 tektin 4 0.14157
ARMC4 armadillo repeat containing 4 0.14153
WDR35 WD repeat domain 35 0.141484
CEP162 centrosomal protein 162kDa 0.141437
CCDC151 coiled-coil domain containing 151 0.14139
IFT20 intraflagellar transport 20 0.141265
TBCC tubulin folding cofactor C 0.141007
TEKT1 tektin 1 0.140881
IFT74 intraflagellar transport 74 0.140614
RP2 retinitis pigmentosa 2 (X-linked recessive) 0.140576
IFT81 intraflagellar transport 81 0.140125
SPAG4 sperm associated antigen 4 0.139819
CCT6A chaperonin containing TCP1, subunit 6A (zeta 1) 0.139645
IFT140 intraflagellar transport 140 0.139635
KIF7 kinesin family member 7 0.139403
CCIN calicin 0.13926
PACRG PARK2 co-regulated 0.13919
NEK7 NIMA-related kinase 7 0.138947
SSX2IP synovial sarcoma, X breakpoint 2 interacting protein 0.138706
DYNLL1 dynein, light chain, LC8-type 1 0.138206
CEP164 centrosomal protein 164kDa 0.137966
IFT172 intraflagellar transport 172 0.137705
NEK9 NIMA-related kinase 9 0.137691
NEK6 NIMA-related kinase 6 0.137611
ODF1 outer dense fiber of sperm tails 1 0.137449
CCT4 chaperonin containing TCP1, subunit 4 (delta) 0.137072
ODF2 outer dense fiber of sperm tails 2 0.136856
APOPT1 apoptogenic 1, mitochondrial 0.136708
TNPO1 transportin 1 0.136111
RAB8A RAB8A, member RAS oncogene family 0.135887
DSTN destrin (actin depolymerizing factor) 0.135847
KIF17 kinesin family member 17 0.135415
SSTR3 somatostatin receptor 3 0.135096
RABEP1 rabaptin, RAB GTPase binding effector protein 1 0.134275
TUB tubby bipartite transcription factor 0.134112
IFT122 intraflagellar transport 122 0.134044
DAND5 DAN domain family member 5, BMP antagonist 0.133957
CEP290 centrosomal protein 290kDa 0.133947
DIAPH3 diaphanous-related formin 3 0.133799
CHL1 cell adhesion molecule L1-like 0.133779
NDEL1 nudE neurodevelopment protein 1-like 1 0.133536
ARG2 arginase 2 0.133475
AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 0.132949
USP9X ubiquitin specific peptidase 9, X-linked 0.132486
BBS2 Bardet-Biedl syndrome 2 0.132463
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.13206
NEK2 NIMA-related kinase 2 0.131966
NDRG1 N-myc downstream regulated 1 0.131332
CCNA2 cyclin A2 0.131193
CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta 0.131
STOM stomatin 0.130765
CYCS cytochrome c, somatic 0.130738
MYO10 myosin X 0.130645
KIF2C kinesin family member 2C 0.130632
SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 0.130056
CDC42 cell division cycle 42 0.130056
TPX2 TPX2, microtubule-associated 0.129843
SUN1 Sad1 and UNC84 domain containing 1 0.129713
WAPAL wings apart-like homolog (Drosophila) 0.129699
TXNDC9 thioredoxin domain containing 9 0.129255
ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 0.129072
RGPD3 RANBP2-like and GRIP domain containing 3 0.128538
UBE2D2 ubiquitin-conjugating enzyme E2D 2 0.128196
RPS6KA1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 0.127792
TMOD4 tropomodulin 4 (muscle) 0.127584
TUBGCP3 tubulin, gamma complex associated protein 3 0.12723
PKD2 polycystic kidney disease 2 (autosomal dominant) 0.127176
DYNLT1 dynein, light chain, Tctex-type 1 0.126507
PTS 6-pyruvoyltetrahydropterin synthase 0.126431
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 0.126373
CYLD cylindromatosis (turban tumor syndrome) 0.126158
LIMK1 LIM domain kinase 1 0.125819
PTBP1 polypyrimidine tract binding protein 1 0.125574
CSN2 casein beta 0.125532
PTMS parathymosin 0.125281
IQGAP1 IQ motif containing GTPase activating protein 1 0.124082
MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 0.123941
RANBP2 RAN binding protein 2 0.12387
GLI1 GLI family zinc finger 1 0.123751
NUMB numb homolog (Drosophila) 0.123533
MGAT4C MGAT4 family, member C 0.123387
TYMS thymidylate synthetase 0.123337
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase 0.123288
PLEK pleckstrin 0.123138
HDAC6 histone deacetylase 6 0.122756
EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 0.12165
PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 0.121537