collagen type vi trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A collagen heterotrimer containing type VI alpha chains in alpha1(VI)alpha2(VI)alpha3(VI) trimers; type VI collagen triple helices associate to form beaded fibrils. (Gene Ontology, GO_0005589)
Similar Terms
Downloads & Tools

Genes

93 proteins co-occuring with the collagen type vi trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL6A3 collagen, type VI, alpha 3 1.69583
COL6A2 collagen, type VI, alpha 2 1.66417
COL14A1 collagen, type XIV, alpha 1 1.63896
COL6A1 collagen, type VI, alpha 1 1.63361
CNDP1 carnosine dipeptidase 1 (metallopeptidase M20 family) 1.35102
RAB42 RAB42, member RAS oncogene family 1.32762
TNC tenascin C 1.11123
SMG8 SMG8 nonsense mediated mRNA decay factor 1.06144
FN1 fibronectin 1 0.977104
FNDC1 fibronectin type III domain containing 1 0.886551
CHRNG cholinergic receptor, nicotinic, gamma (muscle) 0.882399
CARD10 caspase recruitment domain family, member 10 0.824041
IL26 interleukin 26 0.811652
EMILIN1 elastin microfibril interfacer 1 0.807982
EMILIN2 elastin microfibril interfacer 2 0.756345
CARD16 caspase recruitment domain family, member 16 0.753623
DCN decorin 0.750904
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.708808
CHRND cholinergic receptor, nicotinic, delta (muscle) 0.699103
TNFAIP2 tumor necrosis factor, alpha-induced protein 2 0.659482
TGFBR3 transforming growth factor, beta receptor III 0.65388
ITGA1 integrin, alpha 1 0.644858
NID1 nidogen 1 0.634159
THBS3 thrombospondin 3 0.622654
GSTK1 glutathione S-transferase kappa 1 0.619255
CDK13 cyclin-dependent kinase 13 0.610778
IL1RL1 interleukin 1 receptor-like 1 0.605284
KRTAP1-1 keratin associated protein 1-1 0.593072
MATN2 matrilin 2 0.580922
LAMA1 laminin, alpha 1 0.552251
TPBG trophoblast glycoprotein 0.54194
BGN biglycan 0.505131
KLF9 Kruppel-like factor 9 0.485693
ARHGAP4 Rho GTPase activating protein 4 0.476831
ESD esterase D 0.471609
MRI1 methylthioribose-1-phosphate isomerase 1 0.4672
REM1 RAS (RAD and GEM)-like GTP-binding 1 0.459602
COL1A1 collagen, type I, alpha 1 0.455613
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 0.444482
TSPY1 testis specific protein, Y-linked 1 0.44052
CSPG4 chondroitin sulfate proteoglycan 4 0.434196
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 0.412601
TSPY10 testis specific protein, Y-linked 10 0.41182
TSPY3 testis specific protein, Y-linked 3 0.41182
TUBB tubulin, beta class I 0.392388
NUPR1 nuclear protein, transcriptional regulator, 1 0.381584
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.369301
MATN1 matrilin 1, cartilage matrix protein 0.368153
KERA keratocan 0.362422
RAB3B RAB3B, member RAS oncogene family 0.354042
VWF von Willebrand factor 0.351762
FBLN2 fibulin 2 0.351762
THBS2 thrombospondin 2 0.344178
TGFB3 transforming growth factor, beta 3 0.343042
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.309986
TGFB1 transforming growth factor, beta 1 0.309613
THBS1 thrombospondin 1 0.305515
S100B S100 calcium binding protein B 0.304027
NEU2 sialidase 2 (cytosolic sialidase) 0.304027
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 0.30254
CFB complement factor B 0.286983
CX3CL1 chemokine (C-X3-C motif) ligand 1 0.270434
CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein) 0.269701
PRSS1 protease, serine, 1 (trypsin 1) 0.267139
PAPPA pregnancy-associated plasma protein A, pappalysin 1 0.259837
AMBP alpha-1-microglobulin/bikunin precursor 0.259109
TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 0.249664
TGFBI transforming growth factor, beta-induced, 68kDa 0.246769
ALPI alkaline phosphatase, intestinal 0.242076
PRDX2 peroxiredoxin 2 0.241716
GDF15 growth differentiation factor 15 0.238478
CAPNS1 calpain, small subunit 1 0.235607
HAS2 hyaluronan synthase 2 0.232386
SLC16A3 solute carrier family 16 (monocarboxylate transporter), member 3 0.228464
ERCC2 excision repair cross-complementation group 2 0.224558
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.221378
RPSA ribosomal protein SA 0.219969
STC1 stanniocalcin 1 0.206766
FMOD fibromodulin 0.198325
CFL1 cofilin 1 (non-muscle) 0.196999
IL7 interleukin 7 0.191456
CSF1 colony stimulating factor 1 (macrophage) 0.190495
HTRA1 HtrA serine peptidase 1 0.189857
DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 0.187646
C6ORF25 chromosome 6 open reading frame 25 0.183631
MTM1 myotubularin 1 0.182422
CTGF connective tissue growth factor 0.173003
CD44 CD44 molecule (Indian blood group) 0.172468
COL1A2 collagen, type I, alpha 2 0.168598
ANXA6 annexin A6 0.164089
STAT2 signal transducer and activator of transcription 2, 113kDa 0.161275
PDE5A phosphodiesterase 5A, cGMP-specific 0.160456
DYSF dysferlin 0.158692