collagen type iv trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A collagen heterotrimer containing type IV alpha chains; [alpha1(IV)]2alpha2(IV) trimers are commonly observed, although more type IV alpha chains exist and may be present in type IV trimers; type IV collagen triple helices associate to form 3 dimensional nets within basement membranes. (Gene Ontology, GO_0005587)
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Genes

150 proteins co-occuring with the collagen type iv trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FN1 fibronectin 1 2.6076
NID1 nidogen 1 1.93623
TNC tenascin C 1.45986
COL4A1 collagen, type IV, alpha 1 1.43556
MMP2 matrix metallopeptidase 2 1.39796
SEBOX SEBOX homeobox 1.38516
TGFB1 transforming growth factor, beta 1 1.33033
CD44 CD44 molecule (Indian blood group) 1.29906
MMP9 matrix metallopeptidase 9 1.28943
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 1.2455
COL4A5 collagen, type IV, alpha 5 1.23922
COL4A4 collagen, type IV, alpha 4 1.14187
COL4A2 collagen, type IV, alpha 2 1.08882
TIMP1 TIMP metallopeptidase inhibitor 1 1.0741
NID2 nidogen 2 (osteonidogen) 0.966474
TIMP2 TIMP metallopeptidase inhibitor 2 0.924666
LSAMP limbic system-associated membrane protein 0.90089
LAMB2 laminin, beta 2 (laminin S) 0.899962
ZNF627 zinc finger protein 627 0.830007
CD34 CD34 molecule 0.827712
HIST1H2BN histone cluster 1, H2bn 0.798353
CTGF connective tissue growth factor 0.797436
F8 coagulation factor VIII, procoagulant component 0.773188
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.764982
UBL7 ubiquitin-like 7 0.734217
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.73287
VWF von Willebrand factor 0.71946
PLG plasminogen 0.681155
ALB albumin 0.676803
ITGA6 integrin, alpha 6 0.665529
SDC2 syndecan 2 0.644001
DCN decorin 0.623504
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.620529
COL4A6 collagen, type IV, alpha 6 0.604017
UBIAD1 UbiA prenyltransferase domain containing 1 0.596435
KRT15 keratin 15, type I 0.592652
ACE angiotensin I converting enzyme 0.589295
PLAT plasminogen activator, tissue 0.570913
VSX1 visual system homeobox 1 0.568832
B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 0.562602
VCAN versican 0.558871
FGF2 fibroblast growth factor 2 (basic) 0.54771
MMP1 matrix metallopeptidase 1 0.545236
B3GAT1 beta-1,3-glucuronyltransferase 1 0.54194
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.541529
PCNA proliferating cell nuclear antigen 0.537416
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 0.531258
NOV nephroblastoma overexpressed 0.530028
FANCB Fanconi anemia, complementation group B 0.529618
CD68 CD68 molecule 0.523885
COL14A1 collagen, type XIV, alpha 1 0.521841
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.51694
PLAU plasminogen activator, urokinase 0.497015
THY1 Thy-1 cell surface antigen 0.493775
FGF1 fibroblast growth factor 1 (acidic) 0.490944
HBA1 hemoglobin, alpha 1 0.490135
TINAGL1 tubulointerstitial nephritis antigen-like 1 0.487711
HBA2 hemoglobin, alpha 2 0.484079
EFNA3 ephrin-A3 0.480453
IGBP1 immunoglobulin (CD79A) binding protein 1 0.466799
FBXL20 F-box and leucine-rich repeat protein 20 0.465998
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.463198
MMP3 matrix metallopeptidase 3 0.444482
LAMA2 laminin, alpha 2 0.433407
VEGFA vascular endothelial growth factor A 0.426318
IVL involucrin 0.412992
EDA ectodysplasin A 0.401693
SMAD2 SMAD family member 2 0.383124
LAMC2 laminin, gamma 2 0.372749
KDR kinase insert domain receptor 0.372749
VCL vinculin 0.368153
FGF7 fibroblast growth factor 7 0.367006
EMCN endomucin 0.365095
BMP7 bone morphogenetic protein 7 0.363567
CLDN1 claudin 1 0.350622
CLDN7 claudin 7 0.34645
B3GALTL beta 1,3-galactosyltransferase-like 0.341529
MYOF myoferlin 0.338884
IL6 interleukin 6 0.336996
MPV17 MpV17 mitochondrial inner membrane protein 0.326078
THBS1 thrombospondin 1 0.325702
TJP1 tight junction protein 1 0.323825
TIMP3 TIMP metallopeptidase inhibitor 3 0.3227
RENBP renin binding protein 0.318953
KLK14 kallikrein-related peptidase 14 0.314839
LAMA3 laminin, alpha 3 0.312597
VCAM1 vascular cell adhesion molecule 1 0.307749
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 0.307377
ICAM1 intercellular adhesion molecule 1 0.303283
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.30254
KRT17 keratin 17, type I 0.298826
IGF1 insulin-like growth factor 1 (somatomedin C) 0.297713
LAMA5 laminin, alpha 5 0.297342
ITGA7 integrin, alpha 7 0.285138
GDF10 growth differentiation factor 10 0.282558
MYOC myocilin, trabecular meshwork inducible glucocorticoid response 0.27998
FGF9 fibroblast growth factor 9 0.279612
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.275569
ITGA1 integrin, alpha 1 0.268603
PDGFA platelet-derived growth factor alpha polypeptide 0.268237
TNF tumor necrosis factor 0.262755
KERA keratocan 0.253653
HBEGF heparin-binding EGF-like growth factor 0.252564
MFAP2 microfibrillar-associated protein 2 0.244962
SPP1 secreted phosphoprotein 1 0.234174
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.230958
BGN biglycan 0.230601
TGFB2 transforming growth factor, beta 2 0.227041
FAM195A family with sequence similarity 195, member A 0.226686
IL1B interleukin 1, beta 0.225622
HOXB2 homeobox B2 0.225622
MMP28 matrix metallopeptidase 28 0.225267
KRT14 keratin 14, type I 0.22279
HCCAT5 hepatocellular carcinoma associated transcript 5 (non-protein coding) 0.219617
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.213669
COL12A1 collagen, type XII, alpha 1 0.212974
ALPPL2 alkaline phosphatase, placental-like 2 0.208825
ALPL alkaline phosphatase, liver/bone/kidney 0.208481
ALPP alkaline phosphatase, placental 0.208137
MMP7 matrix metallopeptidase 7 0.206082
ETV5 ets variant 5 0.20574
CCL11 chemokine (C-C motif) ligand 11 0.203699
RBP2 retinol binding protein 2, cellular 0.201672
CD79A CD79a molecule, immunoglobulin-associated alpha 0.199325
NCAM1 neural cell adhesion molecule 1 0.198658
CTSD cathepsin D 0.19601
EMX2 empty spiracles homeobox 2 0.194698
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.189222
GIPR gastric inhibitory polypeptide receptor 0.18796
TYMP thymidine phosphorylase 0.187333
EFS embryonal Fyn-associated substrate 0.18702
FLG filaggrin 0.185469
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 0.182723
DSG3 desmoglein 3 0.182422
PLA2R1 phospholipase A2 receptor 1, 180kDa 0.182122
KRT8 keratin 8, type II 0.18093
RARA retinoic acid receptor, alpha 0.177154
PGM5 phosphoglucomutase 5 0.177154
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 0.176305
LGALS3 lectin, galactoside-binding, soluble, 3 0.174087
CTBS chitobiase, di-N-acetyl- 0.171937
MIB1 mindbomb E3 ubiquitin protein ligase 1 0.16935
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.167366
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.167366
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 0.167125
GGT2 gamma-glutamyltransferase 2 0.166884
CSN1S1 casein alpha s1 0.165932
HSPG2 heparan sulfate proteoglycan 2 0.165231
KRT4 keratin 4, type II 0.158502
ACTG1 actin gamma 1 0.157039