collagen type ii trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A collagen homotrimer of alpha1(II) chains; type II collagen triple helices associate to form fibrils. (Gene Ontology, GO_0005585)
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Genes

154 proteins co-occuring with the collagen type ii trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ACAN aggrecan 3.43055
SOX9 SRY (sex determining region Y)-box 9 2.44267
COL2A1 collagen, type II, alpha 1 2.12458
MMP13 matrix metallopeptidase 13 1.69461
COMP cartilage oligomeric matrix protein 1.64912
COL10A1 collagen, type X, alpha 1 1.51469
TGFB3 transforming growth factor, beta 3 1.44799
IVD isovaleryl-CoA dehydrogenase 1.4198
BMP2 bone morphogenetic protein 2 1.34938
TGFB1 transforming growth factor, beta 1 1.32275
MMP3 matrix metallopeptidase 3 1.24707
DCN decorin 1.17773
BGLAP bone gamma-carboxyglutamate (gla) protein 1.12858
BGN biglycan 1.09493
IGF1 insulin-like growth factor 1 (somatomedin C) 1.08069
IHH indian hedgehog 1.05488
VCAN versican 1.04934
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 1.04683
CHAD chondroadherin 1.03579
FGF2 fibroblast growth factor 2 (basic) 1.03479
SPP1 secreted phosphoprotein 1 1.0248
BMP7 bone morphogenetic protein 7 1.0238
SOX6 SRY (sex determining region Y)-box 6 1.02231
MATN1 matrilin 1, cartilage matrix protein 1.01585
MMP1 matrix metallopeptidase 1 1.00448
CD44 CD44 molecule (Indian blood group) 0.972747
SOX5 SRY (sex determining region Y)-box 5 0.943533
RUNX2 runt-related transcription factor 2 0.940689
ITGA10 integrin, alpha 10 0.938795
ALPPL2 alkaline phosphatase, placental-like 2 0.934544
ALPL alkaline phosphatase, liver/bone/kidney 0.934072
ALPP alkaline phosphatase, placental 0.933601
IL1B interleukin 1, beta 0.920918
BMP6 bone morphogenetic protein 6 0.882399
IBSP integrin-binding sialoprotein 0.881016
TGFB2 transforming growth factor, beta 2 0.860311
COL1A1 collagen, type I, alpha 1 0.858014
FN1 fibronectin 1 0.842859
FOXF1 forkhead box F1 0.836892
ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 0.831843
PRG4 proteoglycan 4 0.830925
GDF5 growth differentiation factor 5 0.789191
FMOD fibromodulin 0.756345
MIA melanoma inhibitory activity 0.741867
THY1 Thy-1 cell surface antigen 0.71457
PAX1 paired box 1 0.668992
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 0.648291
FGFR3 fibroblast growth factor receptor 3 0.600644
TNMD tenomodulin 0.594332
TIMP1 TIMP metallopeptidase inhibitor 1 0.57008
CD4 CD4 molecule 0.54771
NCF1 neutrophil cytosolic factor 1 0.539883
PTHLH parathyroid hormone-like hormone 0.536183
MMP9 matrix metallopeptidase 9 0.533719
NPR2 natriuretic peptide receptor 2 0.52675
RPS19 ribosomal protein S19 0.525522
TNF tumor necrosis factor 0.522659
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.521023
DDR2 discoidin domain receptor tyrosine kinase 2 0.517756
MMP2 matrix metallopeptidase 2 0.502288
NOG noggin 0.489327
IL17A interleukin 17A 0.488115
BMP4 bone morphogenetic protein 4 0.471208
CD34 CD34 molecule 0.461998
FOXP3 forkhead box P3 0.456809
INS insulin 0.444878
SHOX2 short stature homeobox 2 0.421212
WNT7A wingless-type MMTV integration site family, member 7A 0.419252
TNC tenascin C 0.418077
HAS2 hyaluronan synthase 2 0.417685
PTH parathyroid hormone 0.41182
HLA-DRB4 major histocompatibility complex, class II, DR beta 4 0.408699
SRY sex determining region Y 0.400527
CD200 CD200 molecule 0.399363
PTN pleiotrophin 0.383124
FRZB frizzled-related protein 0.383124
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 0.382739
TSPO translocator protein (18kDa) 0.37966
RCOR2 REST corepressor 2 0.365477
CTSK cathepsin K 0.364713
GPANK1 G patch domain and ankyrin repeats 1 0.363567
COL9A1 collagen, type IX, alpha 1 0.358609
HAPLN1 hyaluronan and proteoglycan link protein 1 0.357086
MIR98 microRNA 98 0.343421
FCGR2B Fc fragment of IgG, low affinity IIb, receptor (CD32) 0.342285
ALX1 ALX homeobox 1 0.320077
MCAM melanoma cell adhesion molecule 0.319328
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 0.314839
FGF1 fibroblast growth factor 1 (acidic) 0.308867
SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 0.304771
PTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) 0.304027
FGF18 fibroblast growth factor 18 0.303655
MMP8 matrix metallopeptidase 8 0.303283
CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) 0.298826
NPPC natriuretic peptide C 0.295119
GPC3 glypican 3 0.289938
OSM oncostatin M 0.283663
TAC4 tachykinin 4 (hemokinin) 0.282558
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.281085
IGHA1 immunoglobulin heavy constant alpha 1 0.273734
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 0.271167
SMAD2 SMAD family member 2 0.270068
COL11A2 collagen, type XI, alpha 2 0.269701
IL1A interleukin 1, alpha 0.267505
HOXA11 homeobox A11 0.26312
COL11A2P1 collagen, type XI, alpha 2 pseudogene 1 0.258745
COL1A2 collagen, type I, alpha 2 0.258016
COL3A1 collagen, type III, alpha 1 0.248216
CTHRC1 collagen triple helix repeat containing 1 0.247854
OPTC opticin 0.244601
ZC3HC1 zinc finger, C3HC-type containing 1 0.234174
PDGFB platelet-derived growth factor beta polypeptide 0.229532
ANXA5 annexin A5 0.226331
ESRP1 epithelial splicing regulatory protein 1 0.224913
VEGFA vascular endothelial growth factor A 0.222436
MUSTN1 musculoskeletal, embryonic nuclear protein 1 0.218563
TGFBR2 transforming growth factor, beta receptor II (70/80kDa) 0.215761
ANGPTL2 angiopoietin-like 2 0.21228
PTH2R parathyroid hormone 2 receptor 0.209169
MUL1 mitochondrial E3 ubiquitin protein ligase 1 0.206082
LPL lipoprotein lipase 0.204378
WNT1 wingless-type MMTV integration site family, member 1 0.203699
FGF6 fibroblast growth factor 6 0.203361
TNNI2 troponin I type 2 (skeletal, fast) 0.202009
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.197993
IL10 interleukin 10 0.196339
FRK fyn-related Src family tyrosine kinase 0.193394
ITGA1 integrin, alpha 1 0.193394
GSPT1 G1 to S phase transition 1 0.19307
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.190814
DPT dermatopontin 0.190814
SCX scleraxis basic helix-loop-helix transcription factor 0.190495
DLX5 distal-less homeobox 5 0.190495
TRPS1 trichorhinophalangeal syndrome I 0.190175
OPLAH 5-oxoprolinase (ATP-hydrolysing) 0.18796
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.186397
IER3 immediate early response 3 0.185469
TIMP3 TIMP metallopeptidase inhibitor 3 0.184853
PRG1 p53-responsive gene 1 0.184547
WNT5A wingless-type MMTV integration site family, member 5A 0.183935
CCL2 chemokine (C-C motif) ligand 2 0.181524
VIL1 villin 1 0.178877
NOTCH1 notch 1 0.177154
HRH2 histamine receptor H2 0.174635
SP7 Sp7 transcription factor 0.173273
HRH4 histamine receptor H4 0.169859
IL1RN interleukin 1 receptor antagonist 0.168598
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 0.167856
PTH1R parathyroid hormone 1 receptor 0.167366
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.159462
CRP C-reactive protein, pentraxin-related 0.159462
C1QA complement component 1, q subcomponent, A chain 0.158882
SOCS2 suppressor of cytokine signaling 2 0.158882
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.157397