chromatoid body Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182). (Gene Ontology, GO_0033391)
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Genes

79 proteins co-occuring with the chromatoid body cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
TDRD1 tudor domain containing 1 1.98337
PIWIL1 piwi-like RNA-mediated gene silencing 1 1.94391
DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 1.88555
DDX25 DEAD (Asp-Glu-Ala-Asp) box helicase 25 1.85456
TDRD6 tudor domain containing 6 1.81042
TDRD7 tudor domain containing 7 1.55707
MAEL maelstrom spermatogenic transposon silencer 1.38461
TDRD9 tudor domain containing 9 1.36857
ZAR1L zygote arrest 1-like 1.17671
CBS cystathionine-beta-synthase 1.12603
RNF17 ring finger protein 17 1.08628
PIWIL4 piwi-like RNA-mediated gene silencing 4 1.07106
TDRD5 tudor domain containing 5 1.02231
TNP1 transition protein 1 (during histone to protamine replacement) 1.01238
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 0.965993
BASP1 brain abundant, membrane attached signal protein 1 0.936432
TSSK2 testis-specific serine kinase 2 0.902745
FIGLA folliculogenesis specific basic helix-loop-helix 0.895331
TSKS testis-specific serine kinase substrate 0.884705
NANOS1 nanos homolog 1 (Drosophila) 0.852042
NSUN2 NOP2/Sun RNA methyltransferase family, member 2 0.808441
PRM1 protamine 1 0.803396
DPPA4 developmental pluripotency associated 4 0.794229
EDC4 enhancer of mRNA decapping 4 0.774558
PIWIL2 piwi-like RNA-mediated gene silencing 2 0.757253
PAIP1 poly(A) binding protein interacting protein 1 0.746833
SLC25A24 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 0.745025
ZAR1 zygote arrest 1 0.729732
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.703949
DPPA2 developmental pluripotency associated 2 0.682899
PAIP2 poly(A) binding protein interacting protein 2 0.679413
XRN2 5'-3' exoribonuclease 2 0.654311
AKAP3 A kinase (PRKA) anchor protein 3 0.650439
DEAF1 DEAF1 transcription factor 0.632878
LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 0.622229
SIN3B SIN3 transcription regulator family member B 0.603174
DICER1 dicer 1, ribonuclease type III 0.549773
RNMT RNA (guanine-7-) methyltransferase 0.527569
CREM cAMP responsive element modulator 0.520615
DAZ2 deleted in azoospermia 2 0.520206
DAZ1 deleted in azoospermia 1 0.517348
XRN1 5'-3' exoribonuclease 1 0.5149
PABPC1 poly(A) binding protein, cytoplasmic 1 0.495395
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 0.480855
DAZL deleted in azoospermia-like 0.448054
DCP1A decapping mRNA 1A 0.443292
BRD2 bromodomain containing 2 0.427497
TNP2 transition protein 2 (during histone to protamine replacement) 0.425924
AGO2 argonaute RISC catalytic component 2 0.420036
MARCKS myristoylated alanine-rich protein kinase C substrate 0.40675
HIST1H4I histone cluster 1, H4i 0.397423
HIST1H4A histone cluster 1, H4a 0.397423
HIST1H4B histone cluster 1, H4b 0.397423
HIST1H4E histone cluster 1, H4e 0.397423
HIST2H4A histone cluster 2, H4a 0.397423
HIST2H4B histone cluster 2, H4b 0.397423
HIST1H4K histone cluster 1, H4k 0.397423
HIST1H4D histone cluster 1, H4d 0.397423
HIST1H4H histone cluster 1, H4h 0.397423
HIST1H4C histone cluster 1, H4c 0.397423
HIST1H4J histone cluster 1, H4j 0.397423
HIST4H4 histone cluster 4, H4 0.397035
HIST1H4L histone cluster 1, H4l 0.397035
HIST1H4F histone cluster 1, H4f 0.397035
PRM2 protamine 2 0.392001
HAT1 histone acetyltransferase 1 0.388909
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) 0.37966
IFT122 intraflagellar transport 122 0.363567
PRMT5 protein arginine methyltransferase 5 0.360515
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.351382
POLDIP3 polymerase (DNA-directed), delta interacting protein 3 0.330213
AGO1 argonaute RISC catalytic component 1 0.314465
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 0.314465
NONO non-POU domain containing, octamer-binding 0.305143
CLOCK clock circadian regulator 0.277038
DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.265677
CYLD cylindromatosis (turban tumor syndrome) 0.229888
EIF4B eukaryotic translation initiation factor 4B 0.227041
ELAVL1 ELAV like RNA binding protein 1 0.157218