cholelithiasis Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0001081
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Genes

113 genes associated with the cholelithiasis phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 2.10189
ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8 1.68604
DACH1 dachshund family transcription factor 1 1.42567
MYPN myopalladin 1.41525
CA10 carbonic anhydrase X 1.38752
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 1.34636
L3MBTL4 l(3)mbt-like 4 (Drosophila) 1.27984
MYO10 myosin X 1.26963
GNA14 guanine nucleotide binding protein (G protein), alpha 14 1.24612
FRMD4A FERM domain containing 4A 1.18673
TNC tenascin C 1.16921
STX12 syntaxin 12 1.16878
BAZ2B bromodomain adjacent to zinc finger domain, 2B 1.14542
GUSBP11 glucuronidase, beta pseudogene 11 1.12891
HMCN1 hemicentin 1 1.10206
LOC729296 uncharacterized LOC729296 1.0805
SH2D4B SH2 domain containing 4B 1.07264
SGCZ sarcoglycan, zeta 1.04489
APP amyloid beta (A4) precursor protein 1.02205
LRRC69 leucine rich repeat containing 69 0.98717
ZC3H12D zinc finger CCCH-type containing 12D 0.920561
NOTCH4 notch 4 0.898124
CUBN cubilin (intrinsic factor-cobalamin receptor) 0.883789
ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 0.87399
SLC39A11 solute carrier family 39, member 11 0.868105
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.858496
PDIA5 protein disulfide isomerase family A, member 5 0.851357
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.833415
KANK1 KN motif and ankyrin repeat domains 1 0.823019
TFCP2L1 transcription factor CP2-like 1 0.807106
CELF2 CUGBP, Elav-like family member 2 0.802296
RHBDL3 rhomboid, veinlet-like 3 (Drosophila) 0.798387
NTRK2 neurotrophic tyrosine kinase, receptor, type 2 0.785384
UST uronyl-2-sulfotransferase 0.777194
ST6GAL2 ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 0.755257
GLIS3 GLIS family zinc finger 3 0.740664
TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 0.719817
CPA6 carboxypeptidase A6 0.679359
BIN2 bridging integrator 2 0.674238
FHAD1 forkhead-associated (FHA) phosphopeptide binding domain 1 0.656005
FAM155A family with sequence similarity 155, member A 0.634615
C20ORF194 chromosome 20 open reading frame 194 0.631765
SCML4 sex comb on midleg-like 4 (Drosophila) 0.627528
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.618973
ACER2 alkaline ceramidase 2 0.602943
CCDC38 coiled-coil domain containing 38 0.602605
SESTD1 SEC14 and spectrin domains 1 0.600931
LPIN2 lipin 2 0.598959
MAPRE3 microtubule-associated protein, RP/EB family, member 3 0.598149
CIITA class II, major histocompatibility complex, transactivator 0.593884
PTPRT protein tyrosine phosphatase, receptor type, T 0.591439
GFOD1 glucose-fructose oxidoreductase domain containing 1 0.591138
OTOA otoancorin 0.589054
DPYSL5 dihydropyrimidinase-like 5 0.583422
CNTN6 contactin 6 0.579396
FAM183A family with sequence similarity 183, member A 0.574995
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.574338
PCBP3 poly(rC) binding protein 3 0.572823
PHACTR3 phosphatase and actin regulator 3 0.569663
PVT1 Pvt1 oncogene (non-protein coding) 0.563675
TTL tubulin tyrosine ligase 0.562717
GCOM1 GRINL1A complex locus 1 0.559371
GPM6A glycoprotein M6A 0.55667
RYR2 ryanodine receptor 2 (cardiac) 0.55536
UNC93B1 unc-93 homolog B1 (C. elegans) 0.552815
LMAN1 lectin, mannose-binding, 1 0.535185
PLCL1 phospholipase C-like 1 0.534439
SSBP3 single stranded DNA binding protein 3 0.534439
RMND5B required for meiotic nuclear division 5 homolog B (S. cerevisiae) 0.534439
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 0.53334
JAZF1 JAZF zinc finger 1 0.530515
IRF2 interferon regulatory factor 2 0.530172
TUFT1 tuftelin 1 0.526585
ASIC2 acid sensing (proton gated) ion channel 2 0.52536
DLEU7 deleted in lymphocytic leukemia, 7 0.523285
MAK16 MAK16 homolog (S. cerevisiae) 0.522421
CNTFR ciliary neurotrophic factor receptor 0.521853
CTNND2 catenin (cadherin-associated protein), delta 2 0.520461
CORO2A coronin, actin binding protein, 2A 0.519915
CALCRL calcitonin receptor-like 0.516
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.511765
CLMP CXADR-like membrane protein 0.511041
NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough 0.509391
LPP LIM domain containing preferred translocation partner in lipoma 0.508471
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase 0.502867
MPP4 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 0.50065
LRRC48 leucine rich repeat containing 48 0.500231
ARHGAP12 Rho GTPase activating protein 12 0.499404
ATG10 autophagy related 10 0.49545
ULK4 unc-51 like kinase 4 0.495071
WWTR1 WW domain containing transcription regulator 1 0.490369
KDSR 3-ketodihydrosphingosine reductase 0.490369
GLI2 GLI family zinc finger 2 0.490369
EFNA5 ephrin-A5 0.490024
MORC1 MORC family CW-type zinc finger 1 0.488834
GRID1 glutamate receptor, ionotropic, delta 1 0.486516
EPHB2 EPH receptor B2 0.485988
ZNF841 zinc finger protein 841 0.482098
CES1P2 carboxylesterase 1 pseudogene 2 0.481449
SLCO1B7 solute carrier organic anion transporter family, member 1B7 (non-functional) 0.478004
TMEM163 transmembrane protein 163 0.475918
HDAC9 histone deacetylase 9 0.475772
CTSF cathepsin F 0.474617
SYT9 synaptotagmin IX 0.473346
IL4R interleukin 4 receptor 0.473068
EIF4E3 eukaryotic translation initiation factor 4E family member 3 0.472378
ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 0.471411
ACE angiotensin I converting enzyme 0.469948
LOC283177 uncharacterized LOC283177 0.469804
TSHR thyroid stimulating hormone receptor 0.46838
RNF150 ring finger protein 150 0.466305
E2F3 E2F transcription factor 3 0.466305
LRRC4C leucine rich repeat containing 4C 0.465899