chlorosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A large enclosure of aggregated pigment, typically bacteriochlorophyll c (BChl c), that acts as a light-harvesting antenna structure and is characteristic of green photosynthetic bacteria (e.g. Chlorobiaceae). The BChl aggregates are organized into lamellar elements by pigment-pigment rather than pigment-protein interactions. Chlorosomes also contain BChl a, carotenoids, quinones, lipids, and proteins, and are attached to the cytoplasmic membrane via a BChl a-containing protein baseplate. (Gene Ontology, GO_0046858)
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Genes

22 proteins co-occuring with the chlorosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PSCA prostate stem cell antigen 1.56731
CFL1 cofilin 1 (non-muscle) 1.29371
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 1.12347
ARPP21 cAMP-regulated phosphoprotein, 21kDa 1.00547
FDX1 ferredoxin 1 0.938322
MGAM maltase-glucoamylase 0.936905
PGRMC2 progesterone receptor membrane component 2 0.901353
CLEC3A C-type lectin domain family 3, member A 0.825418
CLEC2B C-type lectin domain family 2, member B 0.808441
CLEC10A C-type lectin domain family 10, member A 0.802021
FES FES proto-oncogene, tyrosine kinase 0.711022
GREM2 gremlin 2, DAN family BMP antagonist 0.709251
MON1A MON1 secretory trafficking family member A 0.693832
USP9X ubiquitin specific peptidase 9, X-linked 0.622229
FDXR ferredoxin reductase 0.549773
SLC6A7 solute carrier family 6 (neurotransmitter transporter), member 7 0.433801
NME1-NME2 NME1-NME2 readthrough 0.418468
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 0.410649
CSH2 chorionic somatomammotropin hormone 2 0.392388
RNASE3 ribonuclease, RNase A family, 3 0.378507
NME2 NME/NM23 nucleoside diphosphate kinase 2 0.298455
PDGFB platelet-derived growth factor beta polypeptide 0.182422