chloroplast thylakoid Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. (Gene Ontology, GO_0009534)
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Genes

73 proteins co-occuring with the chloroplast thylakoid cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 2.41832
SPX spexin hormone 2.14715
BFSP2 beaded filament structural protein 2, phakinin 1.63182
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 1.34501
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 1.06549
TXN thioredoxin 1.04783
MGAM maltase-glucoamylase 0.994652
DNAH8 dynein, axonemal, heavy chain 8 0.97953
AIP aryl hydrocarbon receptor interacting protein 0.906926
FKBP2 FK506 binding protein 2, 13kDa 0.904602
TGM1 transglutaminase 1 0.806148
CARS cysteinyl-tRNA synthetase 0.795604
THEG theg spermatid protein 0.785986
HOXC6 homeobox C6 0.642286
CGA glycoprotein hormones, alpha polypeptide 0.640573
YME1L1 YME1-like 1 ATPase 0.640145
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.629465
NVL nuclear VCP-like 0.62393
NPDC1 neural proliferation, differentiation and control, 1 0.619255
UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 0.590553
PGAP3 post-GPI attachment to proteins 3 0.590133
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.589295
ARPP21 cAMP-regulated phosphoprotein, 21kDa 0.588037
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.569664
EFS embryonal Fyn-associated substrate 0.566338
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 0.54194
RNH1 ribonuclease/angiogenin inhibitor 1 0.53454
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.499042
SAMHD1 SAM domain and HD domain 1 0.479647
PDCL3 phosducin-like 3 0.477636
FBLIM1 filamin binding LIM protein 1 0.463598
GPR152 G protein-coupled receptor 152 0.454019
RBBP9 retinoblastoma binding protein 9 0.451233
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 0.431041
ATP11A ATPase, class VI, type 11A 0.42082
OVGP1 oviductal glycoprotein 1, 120kDa 0.415337
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 0.406361
SIX2 SIX homeobox 2 0.399363
C21ORF2 chromosome 21 open reading frame 2 0.398199
SRI sorcin 0.392775
RPS18P12 ribosomal protein S18 pseudogene 12 0.386208
NCF4 neutrophil cytosolic factor 4, 40kDa 0.383509
RPS18 ribosomal protein S18 0.378122
CCDC130 coiled-coil domain containing 130 0.374666
ZNF79 zinc finger protein 79 0.368536
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.364713
FES FES proto-oncogene, tyrosine kinase 0.364713
CA1 carbonic anhydrase I 0.354422
NADK NAD kinase 0.330213
CPLX1 complexin 1 0.309613
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.307377
ATPIF1 ATPase inhibitory factor 1 0.303283
LHB luteinizing hormone beta polypeptide 0.298084
NFYB nuclear transcription factor Y, beta 0.279612
CHL1 cell adhesion molecule L1-like 0.275202
FBP1 fructose-1,6-bisphosphatase 1 0.266774
SCX scleraxis basic helix-loop-helix transcription factor 0.256197
MDH1 malate dehydrogenase 1, NAD (soluble) 0.251476
NFYA nuclear transcription factor Y, alpha 0.24713
MSH2 mutS homolog 2 0.243158
CDSN corneodesmosin 0.232744
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.231672
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 0.224204
SOD2 superoxide dismutase 2, mitochondrial 0.223497
GPR182 G protein-coupled receptor 182 0.219617
RPS2 ribosomal protein S2 0.214366
GLDC glycine dehydrogenase (decarboxylating) 0.212974
NBPF10 neuroblastoma breakpoint family, member 10 0.209858
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.192746
PYGB phosphorylase, glycogen; brain 0.167611
PYGL phosphorylase, glycogen, liver 0.167366
TES testin LIM domain protein 0.167125
PYGM phosphorylase, glycogen, muscle 0.165932