chloroplast stroma Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. (Gene Ontology, GO_0009570)
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Genes

109 proteins co-occuring with the chloroplast stroma cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
RPL22 ribosomal protein L22 1.14239
RPL21 ribosomal protein L21 1.0812
RPL36 ribosomal protein L36 1.04984
OLAH oleoyl-ACP hydrolase 1.01982
RPL14 ribosomal protein L14 0.989759
BRI3 brain protein I3 0.957831
RPS8 ribosomal protein S8 0.915776
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.906926
TXN thioredoxin 0.897183
RPL27 ribosomal protein L27 0.886551
RPS3 ribosomal protein S3 0.830925
FBP1 fructose-1,6-bisphosphatase 1 0.818534
DET1 de-etiolated homolog 1 (Arabidopsis) 0.797895
RPS19 ribosomal protein S19 0.776384
RPL28 ribosomal protein L28 0.769539
PGP phosphoglycolate phosphatase 0.768627
NFYC nuclear transcription factor Y, gamma 0.760433
RPL12 ribosomal protein L12 0.753623
TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) 0.727941
RNASEH2A ribonuclease H2, subunit A 0.711022
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 0.705273
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.65388
FBP2 fructose-1,6-bisphosphatase 2 0.644858
MGAM maltase-glucoamylase 0.63715
CR1 complement component (3b/4b) receptor 1 (Knops blood group) 0.61968
HSPA4 heat shock 70kDa protein 4 0.612048
SPX spexin hormone 0.609509
HES4 hes family bHLH transcription factor 4 0.550599
GSR glutathione reductase 0.547297
PPP1R8 protein phosphatase 1, regulatory subunit 8 0.535361
RPIA ribose 5-phosphate isomerase A 0.531258
UMPS uridine monophosphate synthetase 0.523885
PNPT1 polyribonucleotide nucleotidyltransferase 1 0.514085
RPS11 ribosomal protein S11 0.512455
RPL5 ribosomal protein L5 0.508383
RPS16 ribosomal protein S16 0.502288
PRDX5 peroxiredoxin 5 0.501476
CSAD cysteine sulfinic acid decarboxylase 0.496205
SRP54 signal recognition particle 54kDa 0.4958
SRL sarcalumenin 0.489731
RPL26 ribosomal protein L26 0.48005
RPL8 ribosomal protein L8 0.477233
BLVRB biliverdin reductase B 0.475625
CXCL6 chemokine (C-X-C motif) ligand 6 0.470406
GGPS1 geranylgeranyl diphosphate synthase 1 0.461998
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.454418
FES FES proto-oncogene, tyrosine kinase 0.449643
SNRPA small nuclear ribonucleoprotein polypeptide A 0.445275
GADD45G growth arrest and DNA-damage-inducible, gamma 0.444878
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.44052
RPL19 ribosomal protein L19 0.433012
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.429072
RPS18P12 ribosomal protein S18 pseudogene 12 0.428678
UNK unkempt family zinc finger 0.424353
MDH1 malate dehydrogenase 1, NAD (soluble) 0.42396
RPS18 ribosomal protein S18 0.42082
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.419252
RPL29 ribosomal protein L29 0.413382
PGLS 6-phosphogluconolactonase 0.408699
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.376586
RPL10AP3 ribosomal protein L10a pseudogene 3 0.355563
RPL4 ribosomal protein L4 0.352522
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.350622
YME1L1 YME1-like 1 ATPase 0.331719
OR10A4 olfactory receptor, family 10, subfamily A, member 4 0.326829
RPS14 ribosomal protein S14 0.322325
GLUL glutamate-ammonia ligase 0.314839
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.314091
CLEC3B C-type lectin domain family 3, member B 0.309613
RPL10A ribosomal protein L10a 0.30924
FBN1 fibrillin 1 0.308867
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.305143
PCSK7 proprotein convertase subtilisin/kexin type 7 0.301425
HK1 hexokinase 1 0.299569
NDC1 NDC1 transmembrane nucleoporin 0.298084
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.296972
SCX scleraxis basic helix-loop-helix transcription factor 0.29623
RPL3 ribosomal protein L3 0.292157
CLPS colipase, pancreatic 0.291787
RPL7 ribosomal protein L7 0.289938
RPS12 ribosomal protein S12 0.286245
PPIG peptidylprolyl isomerase G (cyclophilin G) 0.278141
FKBP2 FK506 binding protein 2, 13kDa 0.267505
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.26239
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.26239
RPS2 ribosomal protein S2 0.253291
RNH1 ribonuclease/angiogenin inhibitor 1 0.252927
DGAT1 diacylglycerol O-acyltransferase 1 0.246407
FDXR ferredoxin reductase 0.235966
HMBS hydroxymethylbilane synthase 0.234533
IPP intracisternal A particle-promoted polypeptide 0.233101
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.228819
RPL32 ribosomal protein L32 0.227041
HNMT histamine N-methyltransferase 0.226331
CD2 CD2 molecule 0.224558
MSX2 msh homeobox 2 0.219969
G6PD glucose-6-phosphate dehydrogenase 0.207794
TKT transketolase 0.20574
RIPK4 receptor-interacting serine-threonine kinase 4 0.204378
HTRA1 HtrA serine peptidase 1 0.194045
RPL11 ribosomal protein L11 0.191777
TWIST1 twist family bHLH transcription factor 1 0.177439
PYGB phosphorylase, glycogen; brain 0.175745
PYGL phosphorylase, glycogen, liver 0.175466
PYCR2 pyrroline-5-carboxylate reductase family, member 2 0.174911
PYGM phosphorylase, glycogen, muscle 0.174087
PYCRL pyrroline-5-carboxylate reductase-like 0.171937
DDB1 damage-specific DNA binding protein 1, 127kDa 0.165932
CRYZ crystallin, zeta (quinone reductase) 0.161068