chloroplast part Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any constituent part of a chloroplast, a chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. (Gene Ontology, GO_0044434)
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Genes

313 proteins co-occuring with the chloroplast part cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1 2.07142
SPX spexin hormone 1.90632
MGAM maltase-glucoamylase 1.37907
BFSP2 beaded filament structural protein 2, phakinin 1.35704
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 1.24655
TXN thioredoxin 1.234
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 1.20756
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 1.20756
DNAH8 dynein, axonemal, heavy chain 8 1.10103
EFS embryonal Fyn-associated substrate 1.06701
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 1.06347
POGK pogo transposable element with KRAB domain 1.05085
YME1L1 YME1-like 1 ATPase 1.00005
FBP1 fructose-1,6-bisphosphatase 1 0.970814
SAMM50 SAMM50 sorting and assembly machinery component 0.936905
ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 0.928892
RPL22 ribosomal protein L22 0.827712
TGM1 transglutaminase 1 0.825418
HSPA4 heat shock 70kDa protein 4 0.821288
MDH1 malate dehydrogenase 1, NAD (soluble) 0.813028
GLDC glycine dehydrogenase (decarboxylating) 0.785529
FKBP2 FK506 binding protein 2, 13kDa 0.783698
MDH2 malate dehydrogenase 2, NAD (mitochondrial) 0.779126
GPR152 G protein-coupled receptor 152 0.777755
RPL21 ribosomal protein L21 0.772275
RPL36 ribosomal protein L36 0.744574
OLAH oleoyl-ACP hydrolase 0.717236
RPL14 ribosomal protein L14 0.690764
AIP aryl hydrocarbon receptor interacting protein 0.662503
BRI3 brain protein I3 0.66164
RNASEH2A ribonuclease H2, subunit A 0.644429
RPS8 ribosomal protein S8 0.623504
FES FES proto-oncogene, tyrosine kinase 0.611201
TIMM22 translocase of inner mitochondrial membrane 22 homolog (yeast) 0.602331
RPL27 ribosomal protein L27 0.597276
PRDX5 peroxiredoxin 5 0.589714
PTX4 pentraxin 4, long 0.571745
SLC25A1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 0.561358
CARS cysteinyl-tRNA synthetase 0.560114
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.555145
GZMK granzyme K (granzyme 3; tryptase II) 0.554732
CCR10 chemokine (C-C motif) receptor 10 0.554732
THEG theg spermatid protein 0.551425
CTPS1 CTP synthase 1 0.548535
RPS3 ribosomal protein S3 0.546472
HSPB8 heat shock 22kDa protein 8 0.52675
DET1 de-etiolated homolog 1 (Arabidopsis) 0.51694
RNH1 ribonuclease/angiogenin inhibitor 1 0.514085
PYGB phosphorylase, glycogen; brain 0.510826
PYGL phosphorylase, glycogen, liver 0.510418
HAO1 hydroxyacid oxidase (glycolate oxidase) 1 0.508383
PYGM phosphorylase, glycogen, muscle 0.508383
HAO2 hydroxyacid oxidase 2 (long chain) 0.506757
RPS18P12 ribosomal protein S18 pseudogene 12 0.503912
UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 0.503506
RPS19 ribosomal protein S19 0.497826
RPS18 ribosomal protein S18 0.495395
FDXR ferredoxin reductase 0.49499
RPL28 ribosomal protein L28 0.491752
PGP phosphoglycolate phosphatase 0.490944
NFYC nuclear transcription factor Y, gamma 0.483676
RPL12 ribosomal protein L12 0.477636
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.477233
SAMHD1 SAM domain and HD domain 1 0.464397
SOD2 superoxide dismutase 2, mitochondrial 0.4608
SLC25A28 solute carrier family 25 (mitochondrial iron transporter), member 28 0.4608
TRMT1 tRNA methyltransferase 1 homolog (S. cerevisiae) 0.454816
CLPS colipase, pancreatic 0.448054
HK1 hexokinase 1 0.446069
SRP54 signal recognition particle 54kDa 0.426711
STK16 serine/threonine kinase 16 0.424353
HOXC6 homeobox C6 0.42082
CGA glycoprotein hormones, alpha polypeptide 0.419252
ATP11A ATPase, class VI, type 11A 0.410649
CACNB4 calcium channel, voltage-dependent, beta 4 subunit 0.409089
PDP1 pyruvate dehyrogenase phosphatase catalytic subunit 1 0.407529
NVL nuclear VCP-like 0.404026
NPDC1 neural proliferation, differentiation and control, 1 0.399751
ABHD14A abhydrolase domain containing 14A 0.395873
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.388523
IPP intracisternal A particle-promoted polypeptide 0.385051
FBP2 fructose-1,6-bisphosphatase 2 0.380814
CAT catalase 0.37697
LRRC25 leucine rich repeat containing 25 0.375434
GSR glutathione reductase 0.37505
SRI sorcin 0.373516
PGAP3 post-GPI attachment to proteins 3 0.373132
SKIV2L superkiller viralicidic activity 2-like (S. cerevisiae) 0.372366
ARPP21 cAMP-regulated phosphoprotein, 21kDa 0.371216
KCNB1 potassium channel, voltage gated Shab related subfamily B, member 1 0.361277
CR1 complement component (3b/4b) receptor 1 (Knops blood group) 0.357847
CA1 carbonic anhydrase I 0.330213
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 0.328708
SLC30A2 solute carrier family 30 (zinc transporter), member 2 0.3227
RPS2 ribosomal protein S2 0.3227
DGKQ diacylglycerol kinase, theta 110kDa 0.318953
LPO lactoperoxidase 0.311851
GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 0.311478
TXNDC9 thioredoxin domain containing 9 0.310732
AP1AR adaptor-related protein complex 1 associated regulatory protein 0.309613
CD2 CD2 molecule 0.307749
PPBPP1 pro-platelet basic protein pseudogene 1 0.307749
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.307004
TPI1 triosephosphate isomerase 1 0.305888
HMBS hydroxymethylbilane synthase 0.303283
GLUL glutamate-ammonia ligase 0.302912
HES4 hes family bHLH transcription factor 4 0.29586
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.289938
NFU1 NFU1 iron-sulfur cluster scaffold 0.289199
DHFR dihydrofolate reductase 0.287721
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.285876
CXXC5 CXXC finger protein 5 0.282558
PPP1R8 protein phosphatase 1, regulatory subunit 8 0.282189
RPIA ribose 5-phosphate isomerase A 0.278509
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 0.274468
UMPS uridine monophosphate synthetase 0.2719
RIPK4 receptor-interacting serine-threonine kinase 4 0.271533
PDCL3 phosducin-like 3 0.270434
PNPT1 polyribonucleotide nucleotidyltransferase 1 0.26312
RPS11 ribosomal protein S11 0.26166
RPL5 ribosomal protein L5 0.258016
FBLIM1 filamin binding LIM protein 1 0.257652
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 0.253291
RPS16 ribosomal protein S16 0.252564
EXTL3 exostosin-like glycosyltransferase 3 0.251839
CSAD cysteine sulfinic acid decarboxylase 0.24713
RBBP9 retinoblastoma binding protein 9 0.246407
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.246407
SRL sarcalumenin 0.241356
RPL26 ribosomal protein L26 0.232744
RPL8 ribosomal protein L8 0.230245
BLVRB biliverdin reductase B 0.228819
ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 0.227752
CXCL6 chemokine (C-X-C motif) ligand 6 0.224204
GGPS1 geranylgeranyl diphosphate synthase 1 0.21716
OVGP1 oviductal glycoprotein 1, 120kDa 0.214017
DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 0.210203
FECH ferrochelatase 0.210203
ALB albumin 0.207108
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 0.206082
SNRPA small nuclear ribonucleoprotein polypeptide A 0.202346
GADD45G growth arrest and DNA-damage-inducible, gamma 0.202009
SIX2 SIX homeobox 2 0.199993
C21ORF2 chromosome 21 open reading frame 2 0.198991
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.198325
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.193719
SLC35B2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 0.193394
RHBDL1 rhomboid, veinlet-like 1 (Drosophila) 0.19307
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.192746
RPL19 ribosomal protein L19 0.1921
EGLN2 egl-9 family hypoxia-inducible factor 2 0.191777
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.187333
NCF4 neutrophil cytosolic factor 4, 40kDa 0.186708
UNK unkempt family zinc finger 0.18516
FEN1 flap structure-specific endonuclease 1 0.183935
ARL2 ADP-ribosylation factor-like 2 0.180634
CCDC130 coiled-coil domain containing 130 0.179459
DGKA diacylglycerol kinase, alpha 80kDa 0.178011
RPL29 ribosomal protein L29 0.177154
CSNK2A1 casein kinase 2, alpha 1 polypeptide 0.176305
ZNF346 zinc finger protein 346 0.174911
ZNF79 zinc finger protein 79 0.174911
PGLS 6-phosphogluconolactonase 0.173814
SLC26A6 solute carrier family 26 (anion exchanger), member 6 0.172201
SLC25A17 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 0.16342
LDHAL6B lactate dehydrogenase A-like 6B 0.161068
SLC26A2 solute carrier family 26 (anion exchanger), member 2 0.160053
SYTL4 synaptotagmin-like 4 0.157943
CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 0.13338
SCX scleraxis basic helix-loop-helix transcription factor 0.129025
LHB luteinizing hormone beta polypeptide 0.128312
CHL1 cell adhesion molecule L1-like 0.127524
GFER growth factor, augmenter of liver regeneration 0.125198
A4GALT alpha 1,4-galactosyltransferase 0.124044
TNNT2 troponin T type 2 (cardiac) 0.123789
CPLX1 complexin 1 0.123445
NADK NAD kinase 0.12067
HNMT histamine N-methyltransferase 0.120444
DGAT1 diacylglycerol O-acyltransferase 1 0.117906
TNNI3 troponin I type 3 (cardiac) 0.115344
CDSN corneodesmosin 0.115012
TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) 0.114223
GPR182 G protein-coupled receptor 182 0.11407
NBPF10 neuroblastoma breakpoint family, member 10 0.113304
EN1 engrailed homeobox 1 0.112849
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.110696
ATPIF1 ATPase inhibitory factor 1 0.110439
NMT1 N-myristoyltransferase 1 0.109278
NFYB nuclear transcription factor Y, beta 0.108877
NFYA nuclear transcription factor Y, alpha 0.106558
MSH2 mutS homolog 2 0.106236
CHRM2 cholinergic receptor, muscarinic 2 0.104885
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 0.104741
YY1 YY1 transcription factor 0.104124
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.101687
OR10A4 olfactory receptor, family 10, subfamily A, member 4 0.099807
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.099145
FBN1 fibrillin 1 0.098734
PCSK7 proprotein convertase subtilisin/kexin type 7 0.098265
NDC1 NDC1 transmembrane nucleoporin 0.098067
RPL10AP3 ribosomal protein L10a pseudogene 3 0.097164
RPL4 ribosomal protein L4 0.096961
C6ORF25 chromosome 6 open reading frame 25 0.096181
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.096145
RPS14 ribosomal protein S14 0.095018
CLEC3B C-type lectin domain family 3, member B 0.094181
RPL10A ribosomal protein L10a 0.094156
RPL3 ribosomal protein L3 0.092972
RPL7 ribosomal protein L7 0.092832
RPS12 ribosomal protein S12 0.092571
NOD2 nucleotide-binding oligomerization domain containing 2 0.091338
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.090862
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 0.090309
SFTPA1 surfactant protein A1 0.089933
ENO3 enolase 3 (beta, muscle) 0.089113
PPOX protoporphyrinogen oxidase 0.08884
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.088326
RPL32 ribosomal protein L32 0.088187
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) 0.088159
CPN1 carboxypeptidase N, polypeptide 1 0.088117
DDB1 damage-specific DNA binding protein 1, 127kDa 0.088104
RPS17 ribosomal protein S17 0.087544
ALDOC aldolase C, fructose-bisphosphate 0.087516
CRYZ crystallin, zeta (quinone reductase) 0.087488
ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) 0.087361
TYRO3 TYRO3 protein tyrosine kinase 0.087009
ALDOB aldolase B, fructose-bisphosphate 0.086655
PLA2G1B phospholipase A2, group IB (pancreas) 0.086326
RPL11 ribosomal protein L11 0.085263
P4HB prolyl 4-hydroxylase, beta polypeptide 0.084273
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 0.083892
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.083569
ALDOA aldolase A, fructose-bisphosphate 0.083302
LDHAL6A lactate dehydrogenase A-like 6A 0.083183
TOB1 transducer of ERBB2, 1 0.083108
FH fumarate hydratase 0.082722
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.081658
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.081628
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.081598
SMAD4 SMAD family member 4 0.081114
LDHC lactate dehydrogenase C 0.081007
SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) 0.080338
GUSB glucuronidase, beta 0.079817
CA8 carbonic anhydrase VIII 0.07951
PTGDR prostaglandin D2 receptor (DP) 0.079218
PNLIP pancreatic lipase 0.078986
GZMM granzyme M (lymphocyte met-ase 1) 0.078955
CA7 carbonic anhydrase VII 0.078241
CRYGD crystallin, gamma D 0.077727
SFTPB surfactant protein B 0.076849
FKBP1A FK506 binding protein 1A, 12kDa 0.076644
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.076533
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 0.076106
TIMM23 translocase of inner mitochondrial membrane 23 homolog (yeast) 0.071527
DHRS2 dehydrogenase/reductase (SDR family) member 2 0.069745
COX4I1 cytochrome c oxidase subunit IV isoform 1 0.069482
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 0.069267
ASS1 argininosuccinate synthase 1 0.067335
GP1BA glycoprotein Ib (platelet), alpha polypeptide 0.067169
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b 0.066986
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.06697
COL18A1 collagen, type XVIII, alpha 1 0.06667
CUL2 cullin 2 0.066504
MPG N-methylpurine-DNA glycosylase 0.066404
RPH3A rabphilin 3A 0.066338
NPR1 natriuretic peptide receptor 1 0.064988
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.064086
GPX5 glutathione peroxidase 5 0.064002
GPX4 glutathione peroxidase 4 0.063752
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.063752
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.063501
GPX1 glutathione peroxidase 1 0.063283
TTR transthyretin 0.06273
PFN4 profilin family, member 4 0.062629
PPIG peptidylprolyl isomerase G (cyclophilin G) 0.062462
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble 0.062395
OTC ornithine carbamoyltransferase 0.062261
SRRM1 serine/arginine repetitive matrix 1 0.062026
HIP1 huntingtin interacting protein 1 0.062009
PFN2 profilin 2 0.062009
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 0.061808
ERVW-1 endogenous retrovirus group W, member 1 0.061774
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.061741
LARS leucyl-tRNA synthetase 0.061489
PFN1 profilin 1 0.061271
RPL35 ribosomal protein L35 0.061137
SDHAF2 succinate dehydrogenase complex assembly factor 2 0.061103
GPANK1 G patch domain and ankyrin repeats 1 0.060835
ASCC3 activating signal cointegrator 1 complex subunit 3 0.060448
MSX2 msh homeobox 2 0.05976
FTL ferritin, light polypeptide 0.059525
FTH1 ferritin, heavy polypeptide 1 0.05944
G6PD glucose-6-phosphate dehydrogenase 0.059172
TKT transketolase 0.059071
BCHE butyrylcholinesterase 0.059054
ALLC allantoicase 0.058953
NME3 NME/NM23 nucleoside diphosphate kinase 3 0.058617
TTN titin 0.058584
HTRA1 HtrA serine peptidase 1 0.058483
TSPO translocator protein (18kDa) 0.058366
NME4 NME/NM23 nucleoside diphosphate kinase 4 0.058013
LDHB lactate dehydrogenase B 0.057845
NIN ninein (GSK3B interacting protein) 0.057795
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.057643
TWIST1 twist family bHLH transcription factor 1 0.057576
CSN2 casein beta 0.057476
PYCR2 pyrroline-5-carboxylate reductase family, member 2 0.057425
VIMP VCP-interacting membrane selenoprotein 0.057308
TRIM37 tripartite motif containing 37 0.057258
PYCRL pyrroline-5-carboxylate reductase-like 0.057241
TES testin LIM domain protein 0.056922
RAB27A RAB27A, member RAS oncogene family 0.056201
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.056168