chiasma Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A connection formed between chromatids, visible during meiosis, thought to be the point of the interchange involved in crossing-over. (Gene Ontology, GO_0005712)
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Genes

92 proteins co-occuring with the chiasma cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
NF1 neurofibromin 1 1.49775
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) 1.22672
RAX retina and anterior neural fold homeobox 1.08882
RNF212 ring finger protein 212 0.984393
NKX1-1 NK1 homeobox 1 0.893943
MLH1 mutL homolog 1 0.888397
MSH2 mutS homolog 2 0.871806
HMX3 H6 family homeobox 3 0.865367
SMC1B structural maintenance of chromosomes 1B 0.80523
TECTA tectorin alpha 0.796062
NOVA1 neuro-oncological ventral antigen 1 0.774558
MCC mutated in colorectal cancers 0.774558
STAG3 stromal antigen 3 0.772732
POMC proopiomelanocortin 0.745477
VAX1 ventral anterior homeobox 1 0.728836
MSH4 mutS homolog 4 0.698223
PRL prolactin 0.666394
SIX6 SIX homeobox 6 0.665529
NYX nyctalopin 0.650439
GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 0.650439
GYLTL1B glycosyltransferase-like 1B 0.648291
SMC3 structural maintenance of chromosomes 3 0.629039
UNC5A unc-5 homolog A (C. elegans) 0.617982
GHRH growth hormone releasing hormone 0.614165
RCN1 reticulocalbin 1, EF-hand calcium binding domain 0.613742
SLC39A2 solute carrier family 39 (zinc transporter), member 2 0.612471
SST somatostatin 0.607818
MCM8 minichromosome maintenance complex component 8 0.568832
PAX6 paired box 6 0.558457
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 0.546885
GML glycosylphosphatidylinositol anchored molecule like 0.546885
SPEG SPEG complex locus 0.537416
DMC1 DNA meiotic recombinase 1 0.536183
RECQL5 RecQ protein-like 5 0.528388
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 0.518573
SLC39A4 solute carrier family 39 (zinc transporter), member 4 0.510418
BOLL boule-like RNA-binding protein 0.503099
RICTOR RPTOR independent companion of MTOR, complex 2 0.500664
MSH5 mutS homolog 5 0.495395
COPS2 COP9 signalosome subunit 2 0.482467
RECQL RecQ helicase-like 0.463598
MBP myelin basic protein 0.461199
PEG3 paternally expressed 3 0.460001
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.443689
DTNA dystrobrevin, alpha 0.438937
CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit 0.438937
CLCN2 chloride channel, voltage-sensitive 2 0.434591
ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 0.415337
SMC1A structural maintenance of chromosomes 1A 0.404804
CDC23 cell division cycle 23 0.39626
RPA3 replication protein A3, 14kDa 0.389682
GNS glucosamine (N-acetyl)-6-sulfatase 0.382354
AMH anti-Mullerian hormone 0.381199
GPI glucose-6-phosphate isomerase 0.354422
PAX2 paired box 2 0.333225
RAD51 RAD51 recombinase 0.332095
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.32195
TRH thyrotropin-releasing hormone 0.318953
KIF2C kinesin family member 2C 0.308867
BLM Bloom syndrome, RecQ helicase-like 0.296972
LAX1 lymphocyte transmembrane adaptor 1 0.291417
OTX2 orthodenticle homeobox 2 0.284401
OXT oxytocin/neurophysin I prepropeptide 0.284401
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.274101
BUB1B BUB1 mitotic checkpoint serine/threonine kinase B 0.267505
PIDD1 p53-induced death domain protein 1 0.251476
CDC16 cell division cycle 16 0.249302
AQP4 aquaporin 4 0.249302
SRY sex determining region Y 0.237042
SMTNL1 smoothelin-like 1 0.230958
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 0.226331
CHAT choline O-acetyltransferase 0.219969
PGM1 phosphoglucomutase 1 0.215412
NOS1 nitric oxide synthase 1 (neuronal) 0.208137
CDC27 cell division cycle 27 0.204039
CFL1 cofilin 1 (non-muscle) 0.204039
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 0.200663
RAD18 RAD18 E3 ubiquitin protein ligase 0.198325
AK1 adenylate kinase 1 0.190814
ACE angiotensin I converting enzyme 0.183025
AURKB aurora kinase B 0.179167
CFH complement factor H 0.175745
OLIG2 oligodendrocyte lineage transcription factor 2 0.174911
CNP 2',3'-cyclic nucleotide 3' phosphodiesterase 0.174087
SPO11 SPO11 meiotic protein covalently bound to DSB 0.172735
SYCP3 synaptonemal complex protein 3 0.17141
AVP arginine vasopressin 0.169099
TYRP1 tyrosinase-related protein 1 0.165231
FOSB FBJ murine osteosarcoma viral oncogene homolog B 0.16342
NTN1 netrin 1 0.161693
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 0.161068
NRP1 neuropilin 1 0.159074