chd-type complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A SWI/SNF-type complex that contains a subunit from the CHD(Chromodomain helicase DNA-binding) family. The CHD family is characterized by two signature sequence motifs: tandem chromodomains located in the N-terminal region, and the SNF2-like ATPase domain located in the central region of the protein structure. (Gene Ontology, GO_0090545)
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Genes

190 proteins co-occuring with the chd-type complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CHD4 chromodomain helicase DNA binding protein 4 2.38368
MTA1 metastasis associated 1 2.27441
MTA2 metastasis associated 1 family, member 2 2.1355
MTA3 metastasis associated 1 family, member 3 1.83883
HDAC1 histone deacetylase 1 1.64912
ZFPM1 zinc finger protein, FOG family member 1 1.54517
RBBP4 retinoblastoma binding protein 4 1.52936
HDAC2 histone deacetylase 2 1.47174
CHD3 chromodomain helicase DNA binding protein 3 1.38073
GATAD2B GATA zinc finger domain containing 2B 1.35758
HDAC9 histone deacetylase 9 1.26445
GATAD2A GATA zinc finger domain containing 2A 1.23244
SIN3A SIN3 transcription regulator family member A 1.22724
CDK2AP1 cyclin-dependent kinase 2 associated protein 1 1.16286
MBD3L1 methyl-CpG binding domain protein 3-like 1 1.16184
RCOR1 REST corepressor 1 1.14648
MBD3 methyl-CpG binding domain protein 3 1.12296
BCL11B B-cell CLL/lymphoma 11B (zinc finger protein) 1.0243
HIC1 hypermethylated in cancer 1 1.01833
MBD3L2 methyl-CpG binding domain protein 3-like 2 1.01784
SALL1 spalt-like transcription factor 1 1.00399
SETDB1 SET domain, bifurcated 1 1.00202
KDM1A lysine (K)-specific demethylase 1A 1.00005
PCCA propionyl CoA carboxylase, alpha polypeptide 0.993183
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.90321
ZNF521 zinc finger protein 521 0.862149
ZFHX4 zinc finger homeobox 4 0.862149
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 0.854798
EBF1 early B-cell factor 1 0.799728
RBBP7 retinoblastoma binding protein 7 0.770451
ZGPAT zinc finger, CCCH-type with G patch domain 0.762707
ZNF827 zinc finger protein 827 0.753623
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.753623
H3F3A H3 histone, family 3A 0.749094
H3F3B H3 histone, family 3B (H3.3B) 0.749094
PHF6 PHD finger protein 6 0.677238
ZFPM2 zinc finger protein, FOG family member 2 0.669858
FAM64A family with sequence similarity 64, member A 0.662503
GFI1B growth factor independent 1B transcription repressor 0.661208
NCOR1 nuclear receptor corepressor 1 0.65388
FOXK1 forkhead box K1 0.641858
MBD2 methyl-CpG binding domain protein 2 0.636723
NANOG Nanog homeobox 0.626909
BCOR BCL6 corepressor 0.620954
PIAS1 protein inhibitor of activated STAT, 1 0.606128
TRIM27 tripartite motif containing 27 0.603174
GIGYF2 GRB10 interacting GYF protein 2 0.602331
CCL14 chemokine (C-C motif) ligand 14 0.598538
CARM1 coactivator-associated arginine methyltransferase 1 0.593492
KLF1 Kruppel-like factor 1 (erythroid) 0.587618
FOXP4 forkhead box P4 0.585523
HDAC3 histone deacetylase 3 0.585105
NAB2 NGFI-A binding protein 2 (EGR1 binding protein 2) 0.567169
PRMT5 protein arginine methyltransferase 5 0.562187
FOXK2 forkhead box K2 0.557629
FOXP1 forkhead box P1 0.552251
PIAS2 protein inhibitor of activated STAT, 2 0.537827
ACTL6A actin-like 6A 0.531258
E2F7 E2F transcription factor 7 0.522659
TBX18 T-box 18 0.522659
EOMES eomesodermin 0.518165
MYB v-myb avian myeloblastosis viral oncogene homolog 0.516124
APPL1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 0.509197
EGLN2 egl-9 family hypoxia-inducible factor 2 0.507977
TBX20 T-box 20 0.50757
DNAH8 dynein, axonemal, heavy chain 8 0.507163
ESR1 estrogen receptor 1 0.49742
ATOH1 atonal homolog 1 (Drosophila) 0.487711
L3MBTL2 l(3)mbt-like 2 (Drosophila) 0.487711
LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 0.486096
SALL4 spalt-like transcription factor 4 0.484886
NPRL3 nitrogen permease regulator-like 3 (S. cerevisiae) 0.480855
PIAS3 protein inhibitor of activated STAT, 3 0.47844
TRIM28 tripartite motif containing 28 0.469203
LECT2 leukocyte cell-derived chemotaxin 2 0.458404
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) 0.454418
PPP2R1A protein phosphatase 2, regulatory subunit A, alpha 0.448054
RNF168 ring finger protein 168, E3 ubiquitin protein ligase 0.448054
MECP2 methyl CpG binding protein 2 0.448054
PRMT7 protein arginine methyltransferase 7 0.447656
ZNF217 zinc finger protein 217 0.442104
LMO2 LIM domain only 2 (rhombotin-like 1) 0.437751
TRIM24 tripartite motif containing 24 0.432224
ZNF423 zinc finger protein 423 0.428678
EGR2 early growth response 2 0.426318
SAE1 SUMO1 activating enzyme subunit 1 0.424745
TP53 tumor protein p53 0.422782
ARID1A AT rich interactive domain 1A (SWI-like) 0.420428
PHF21A PHD finger protein 21A 0.419252
EGR1 early growth response 1 0.417294
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 0.414164
PHF19 PHD finger protein 19 0.409089
RPL26L1 ribosomal protein L26-like 1 0.408309
ELF5 E74-like factor 5 (ets domain transcription factor) 0.397811
TET1 tet methylcytosine dioxygenase 1 0.396648
KDM3A lysine (K)-specific demethylase 3A 0.395485
RNF8 ring finger protein 8, E3 ubiquitin protein ligase 0.385822
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.383124
MECOM MDS1 and EVI1 complex locus 0.37697
TAL1 T-cell acute lymphocytic leukemia 1 0.374283
MYCBP MYC binding protein 0.37045
KLF10 Kruppel-like factor 10 0.366623
GBX2 gastrulation brain homeobox 2 0.35899
SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) 0.354042
CTBP1 C-terminal binding protein 1 0.351002
SETD1B SET domain containing 1B 0.344935
CDX2 caudal type homeobox 2 0.344556
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.341907
BCL6 B-cell CLL/lymphoma 6 0.341529
WDR77 WD repeat domain 77 0.335864
ZBTB7A zinc finger and BTB domain containing 7A 0.334356
SAP18 Sin3A-associated protein, 18kDa 0.333979
VPRBP Vpr (HIV-1) binding protein 0.331719
KDM5B lysine (K)-specific demethylase 5B 0.327581
CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 0.324576
SIN3B SIN3 transcription regulator family member B 0.31783
HNMT histamine N-methyltransferase 0.309613
HIST2H4B histone cluster 2, H4b 0.305888
HIST2H4A histone cluster 2, H4a 0.305888
HIST1H4E histone cluster 1, H4e 0.305888
HIST1H4C histone cluster 1, H4c 0.305888
HIST1H4H histone cluster 1, H4h 0.305888
HIST1H4I histone cluster 1, H4i 0.305888
HIST1H4B histone cluster 1, H4b 0.305888
HIST1H4J histone cluster 1, H4j 0.305888
HIST1H4K histone cluster 1, H4k 0.305888
HIST1H4D histone cluster 1, H4d 0.305888
HIST1H4F histone cluster 1, H4f 0.305888
HIST1H4A histone cluster 1, H4a 0.305888
HIST1H4L histone cluster 1, H4l 0.305515
HIST4H4 histone cluster 4, H4 0.305515
HDAC5 histone deacetylase 5 0.304027
RUVBL1 RuvB-like AAA ATPase 1 0.302912
SAP30 Sin3A-associated protein, 30kDa 0.30254
ZNF222 zinc finger protein 222 0.301797
CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2) 0.29994
KDM5A lysine (K)-specific demethylase 5A 0.293267
MCRS1 microspherule protein 1 0.292527
CIDEB cell death-inducing DFFA-like effector b 0.291417
IKZF1 IKAROS family zinc finger 1 (Ikaros) 0.290308
HBG2 hemoglobin, gamma G 0.289569
RPL26 ribosomal protein L26 0.289569
TRIM10 tripartite motif containing 10 0.28846
ARID1B AT rich interactive domain 1B (SWI1-like) 0.286245
TAF1L TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like 0.285876
TRIM26 tripartite motif containing 26 0.283295
AKR1C4 aldo-keto reductase family 1, member C4 0.27998
PAX5 paired box 5 0.27998
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.279612
TRIM15 tripartite motif containing 15 0.273367
CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 0.273367
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 0.2708
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 0.270434
CDH3 cadherin 3, type 1, P-cadherin (placental) 0.269701
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.268603
TTF1 transcription termination factor, RNA polymerase I 0.267139
GATA2 GATA binding protein 2 0.260566
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 0.254743
DNMT1 DNA (cytosine-5-)-methyltransferase 1 0.248578
UBA2 ubiquitin-like modifier activating enzyme 2 0.248216
HARS histidyl-tRNA synthetase 0.24713
SETD1A SET domain containing 1A 0.239557
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.235249
HDAC4 histone deacetylase 4 0.229888
FOXH1 forkhead box H1 0.229532
SIX2 SIX homeobox 2 0.227041
RAD21 RAD21 homolog (S. pombe) 0.225267
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) 0.224558
LDB1 LIM domain binding 1 0.22173
MAT2A methionine adenosyltransferase II, alpha 0.213322
RNF2 ring finger protein 2 0.212974
KAT7 K(lysine) acetyltransferase 7 0.21124
TIPIN TIMELESS interacting protein 0.198325
MORF4 mortality factor 4 (pseudogene) 0.194698
EGLN3 egl-9 family hypoxia-inducible factor 3 0.194698
RSPO1 R-spondin 1 0.189222
EHMT1 euchromatic histone-lysine N-methyltransferase 1 0.178299
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 0.178011
TDG thymine-DNA glycosylase 0.175745
CHD1L chromodomain helicase DNA binding protein 1-like 0.172201
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa 0.170888
TCF12 transcription factor 12 0.166405
EWSR1 EWS RNA-binding protein 1 0.16477
THBS4 thrombospondin 4 0.164542
EGR3 early growth response 3 0.162117
PAX2 paired box 2 0.161693
WIPF2 WAS/WASL interacting protein family, member 2 0.159658
PLAUR plasminogen activator, urokinase receptor 0.159074
SENP1 SUMO1/sentrin specific peptidase 1 0.156863
PELP1 proline, glutamate and leucine rich protein 1 0.156688