cellular bud neck Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The constriction between the mother cell and daughter cell (bud) in an organism that reproduces by budding. (Gene Ontology, GO_0005935)
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Genes

89 proteins co-occuring with the cellular bud neck cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
SEPT5 septin 5 2.64185
SEPT7 septin 7 2.11294
NIM1K NIM1 serine/threonine protein kinase 1.68848
DUSP12 dual specificity phosphatase 12 1.08679
SUMO1 small ubiquitin-like modifier 1 1.0109
DUSP8 dual specificity phosphatase 8 1.00794
TRIM9 tripartite motif containing 9 0.952096
CC2D1B coiled-coil and C2 domain containing 1B 0.934544
CDC14A cell division cycle 14A 0.895331
NSMCE2 non-SMC element 2, MMS21 homolog (S. cerevisiae) 0.843318
GPS1 G protein pathway suppressor 1 0.841023
RAB40AL RAB40A, member RAS oncogene family-like 0.835056
DCTN1 dynactin 1 0.834597
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 0.79148
CDC42 cell division cycle 42 0.769083
CDC42EP5 CDC42 effector protein (Rho GTPase binding) 5 0.726152
WIPF1 WAS/WASL interacting protein family, member 1 0.659482
PLB1 phospholipase B1 0.602752
GPR182 G protein-coupled receptor 182 0.594753
MARK1 MAP/microtubule affinity-regulating kinase 1 0.592652
PHACTR1 phosphatase and actin regulator 1 0.58134
EXOSC2 exosome component 2 0.578416
DNAH12 dynein, axonemal, heavy chain 12 0.575912
DNAH14 dynein, axonemal, heavy chain 14 0.575912
CC2D1A coiled-coil and C2 domain containing 1A 0.565923
VAC14 Vac14 homolog (S. cerevisiae) 0.550599
DNAH5 dynein, axonemal, heavy chain 5 0.547297
VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) 0.546472
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.542352
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.540706
PPP1R7 protein phosphatase 1, regulatory subunit 7 0.496205
DNAH9 dynein, axonemal, heavy chain 9 0.486096
DIS3 DIS3 exosome endoribonuclease and 3'-5' exoribonuclease 0.474018
HLA-DMA major histocompatibility complex, class II, DM alpha 0.473215
UBA2 ubiquitin-like modifier activating enzyme 2 0.473215
SNW1 SNW domain containing 1 0.470807
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase 0.470807
ANLN anillin, actin binding protein 0.470406
ACIN1 apoptotic chromatin condensation inducer 1 0.454418
SHD Src homology 2 domain containing transforming protein D 0.444878
RAP2B RAP2B, member of RAS oncogene family 0.44052
FMN1 formin 1 0.43538
SAR1A secretion associated, Ras related GTPase 1A 0.433801
ARF3 ADP-ribosylation factor 3 0.433012
RAB1B RAB1B, member RAS oncogene family 0.430253
H3F3C H3 histone, family 3C 0.427891
AMPH amphiphysin 0.423174
SEPT11 septin 11 0.407919
GRIK4 glutamate receptor, ionotropic, kainate 4 0.387751
PIAS3 protein inhibitor of activated STAT, 3 0.381199
RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 0.372749
RER1 retention in endoplasmic reticulum sorting receptor 1 0.366241
PIKFYVE phosphoinositide kinase, FYVE finger containing 0.361277
NUF2 NUF2, NDC80 kinetochore complex component 0.347967
SEPT6 septin 6 0.338506
CHFR checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase 0.330589
PLEK pleckstrin 0.312597
WAS Wiskott-Aldrich syndrome 0.312224
EXOC2 exocyst complex component 2 0.287352
ATR ATR serine/threonine kinase 0.279612
MBL2 mannose-binding lectin (protein C) 2, soluble 0.266042
STK38 serine/threonine kinase 38 0.260566
RAD17 RAD17 homolog (S. pombe) 0.243158
PFN4 profilin family, member 4 0.234891
ALPI alkaline phosphatase, intestinal 0.225622
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.225622
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.225622
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.225267
UBE2D2 ubiquitin-conjugating enzyme E2D 2 0.224558
ARF1 ADP-ribosylation factor 1 0.224558
PFN2 profilin 2 0.22173
SH3GL2 SH3-domain GRB2-like 2 0.220673
CHMP4A charged multivesicular body protein 4A 0.21716
KLHL2 kelch-like family member 2 0.214714
DNAJC6 DnaJ (Hsp40) homolog, subfamily C, member 6 0.209169
APH1A APH1A gamma secretase subunit 0.206766
PFN1 profilin 1 0.206082
PLD2 phospholipase D2 0.198991
PLK1 polo-like kinase 1 0.196339
CNOT2 CCR4-NOT transcription complex, subunit 2 0.1921
MYO5A myosin VA (heavy chain 12, myoxin) 0.189539
CKAP5 cytoskeleton associated protein 5 0.187333
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.186087
SEC13 SEC13 homolog (S. cerevisiae) 0.184241
ZMPSTE24 zinc metallopeptidase STE24 0.181227
EXO1 exonuclease 1 0.16935
SUMO3 small ubiquitin-like modifier 3 0.16477
PPP2R4 protein phosphatase 2A activator, regulatory subunit 4 0.159462
SUMO2 small ubiquitin-like modifier 2 0.156342