capsule Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A protective structure surrounding some fungi and bacteria, attached externally to the cell wall and composed primarily of polysaccharides. Capsules are highly organized structures that adhere strongly to cells and cannot be easily removed. Capsules play important roles in pathogenicity, preventing phagocytosis by other cells, adherance, and resistance to dessication. (Gene Ontology, GO_0042603)
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Genes

67 proteins co-occuring with the capsule cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
MSLNL mesothelin-like 1.26075
HTRA3 HtrA serine peptidase 3 1.06498
KLK3 kallikrein-related peptidase 3 0.910647
CDK2AP1 cyclin-dependent kinase 2 associated protein 1 0.682463
HABP2 hyaluronan binding protein 2 0.680284
HELLS helicase, lymphoid-specific 0.666827
SLC4A11 solute carrier family 4, sodium borate transporter, member 11 0.65259
LENEP lens epithelial protein 0.612471
CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2 0.611201
CDH3 cadherin 3, type 1, P-cadherin (placental) 0.583849
PTPRO protein tyrosine phosphatase, receptor type, O 0.560943
ZNF135 zinc finger protein 135 0.558457
WTIP Wilms tumor 1 interacting protein 0.542352
LAX1 lymphocyte transmembrane adaptor 1 0.504318
PRCC papillary renal cell carcinoma (translocation-associated) 0.4672
NDUFS2 NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) 0.464798
C3 complement component 3 0.460001
ADAM15 ADAM metallopeptidase domain 15 0.450836
CASD1 CAS1 domain containing 1 0.443292
UGDH UDP-glucose 6-dehydrogenase 0.44052
PRG4 proteoglycan 4 0.437751
CADM1 cell adhesion molecule 1 0.429072
CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 0.41886
COL5A1 collagen, type V, alpha 1 0.399363
ADAM9 ADAM metallopeptidase domain 9 0.398199
KLK15 kallikrein-related peptidase 15 0.39626
CD79A CD79a molecule, immunoglobulin-associated alpha 0.377738
CPSF3 cleavage and polyadenylation specific factor 3, 73kDa 0.371599
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 0.368153
TNFSF13B tumor necrosis factor (ligand) superfamily, member 13b 0.365095
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 0.359752
TGFB1 transforming growth factor, beta 1 0.357086
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.341529
DPT dermatopontin 0.338506
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.327581
CHRM3 cholinergic receptor, muscarinic 3 0.318953
MLANA melan-A 0.307377
ANOS1 anosmin 1 0.29623
SUMF2 sulfatase modifying factor 2 0.295489
CAMP cathelicidin antimicrobial peptide 0.266774
FBN2 fibrillin 2 0.266408
PRRC2A proline-rich coiled-coil 2A 0.260931
C5AR1 complement component 5a receptor 1 0.254743
TLR9 toll-like receptor 9 0.250026
CD4 CD4 molecule 0.24894
AMD1 adenosylmethionine decarboxylase 1 0.235966
LTA lymphotoxin alpha 0.228464
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.225622
PRDX1 peroxiredoxin 1 0.224558
COL3A1 collagen, type III, alpha 1 0.224204
SYNPO synaptopodin 0.21228
VIP vasoactive intestinal peptide 0.208137
CCL4 chemokine (C-C motif) ligand 4 0.188905
LRP5 low density lipoprotein receptor-related protein 5 0.18702
CD209 CD209 molecule 0.184853
TYRP1 tyrosinase-related protein 1 0.182723
AKT2 v-akt murine thymoma viral oncogene homolog 2 0.180045
FLNC filamin C, gamma 0.176024
LY96 lymphocyte antigen 96 0.174087
TLR2 toll-like receptor 2 0.168101
DCT dopachrome tautomerase 0.167125
MMP2 matrix metallopeptidase 2 0.165
REN renin 0.164315
FGF1 fibroblast growth factor 1 (acidic) 0.159462
PCNA proliferating cell nuclear antigen 0.159074
CD163 CD163 molecule 0.158502
ALB albumin 0.158315