capsomere Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any of the protein subunits that comprise the closed shell or coat (capsid) of certain viruses. (Gene Ontology, GO_0046727)
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Genes

63 proteins co-occuring with the capsomere cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 1.07562
KPNB1 karyopherin (importin) beta 1 1.00892
TBRG1 transforming growth factor beta regulator 1 0.972747
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.89672
NPAT nuclear protein, ataxia-telangiectasia locus 0.865826
NLE1 notchless homolog 1 (Drosophila) 0.792396
GYPE glycophorin E (MNS blood group) 0.755891
SIM2 single-minded family bHLH transcription factor 2 0.715014
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.711465
GAS1 growth arrest-specific 1 0.669425
MTSS1 metastasis suppressor 1 0.639289
GAS2 growth arrest-specific 2 0.635868
ZFYVE1 zinc finger, FYVE domain containing 1 0.617557
TICAM2 toll-like receptor adaptor molecule 2 0.614589
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.604862
BRD3 bromodomain containing 3 0.587199
PSCA prostate stem cell antigen 0.580086
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.57008
ACKR1 atypical chemokine receptor 1 (Duffy blood group) 0.553905
MT2A metallothionein 2A 0.508383
FGB fibrinogen beta chain 0.505537
CD46 CD46 molecule, complement regulatory protein 0.50107
SDC2 syndecan 2 0.466799
FGA fibrinogen alpha chain 0.463598
GP5 glycoprotein V (platelet) 0.452825
TFF3 trefoil factor 3 (intestinal) 0.450438
CHMP2A charged multivesicular body protein 2A 0.444085
CCL21 chemokine (C-C motif) ligand 21 0.420428
PPIB peptidylprolyl isomerase B (cyclophilin B) 0.420036
TNFRSF14 tumor necrosis factor receptor superfamily, member 14 0.419644
ACAA1 acetyl-CoA acyltransferase 1 0.40714
GZMM granzyme M (lymphocyte met-ase 1) 0.403637
F11R F11 receptor 0.400916
F10 coagulation factor X 0.390841
TLR4 toll-like receptor 4 0.390455
S100A10 S100 calcium binding protein A10 0.389296
PPEF1 protein phosphatase, EF-hand calcium binding domain 1 0.37697
HTRA1 HtrA serine peptidase 1 0.374666
PDGFB platelet-derived growth factor beta polypeptide 0.340773
SP6 Sp6 transcription factor 0.325702
LGALS7 lectin, galactoside-binding, soluble, 7 0.320451
ITGB7 integrin, beta 7 0.312971
ITGB8 integrin, beta 8 0.312224
ITGB6 integrin, beta 6 0.311851
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 0.301054
GP6 glycoprotein VI (platelet) 0.268603
GSTM1 glutathione S-transferase mu 1 0.258745
CXCL9 chemokine (C-X-C motif) ligand 9 0.252564
CD79A CD79a molecule, immunoglobulin-associated alpha 0.250389
TF transferrin 0.228464
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 0.228108
ITGB4 integrin, beta 4 0.22385
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 0.21124
CTLA4 cytotoxic T-lymphocyte-associated protein 4 0.176305
GSTA3 glutathione S-transferase alpha 3 0.170629
GSTA4 glutathione S-transferase alpha 4 0.16935
GSTA2 glutathione S-transferase alpha 2 0.16935
GSTA1 glutathione S-transferase alpha 1 0.167856
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 0.167856
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.147085
LAP3 leucine aminopeptidase 3 0.142267
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.141546
PROCR protein C receptor, endothelial 0.141273