biliary cirrhosis Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description liver damage to parenchymal cells due to obstruction of bile flow in the bile ducts (Mammalian Phenotype Ontology, MP_0003256)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0002613
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Genes

45 genes associated with the biliary cirrhosis phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 2.2254
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) 1.9268
IL12RB2 interleukin 12 receptor, beta 2 1.90055
TNPO3 transportin 3 1.82094
TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 1.66286
SPIB Spi-B transcription factor (Spi-1/PU.1 related) 1.61591
RPL3 ribosomal protein L3 1.56207
CLEC16A C-type lectin domain family 16, member A 1.53903
EXOC3L4 exocyst complex component 3-like 4 1.53471
RAD51B RAD51 paralog B 1.48419
TNFSF8 tumor necrosis factor (ligand) superfamily, member 8 1.47227
TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 1.47083
C6ORF10 chromosome 6 open reading frame 10 1.43716
RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4 1.41863
ARHGAP31 Rho GTPase activating protein 31 1.4169
TMEM39A transmembrane protein 39A 1.41122
IL7R interleukin 7 receptor 1.39829
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 1.32793
IKZF3 IKAROS family zinc finger 3 (Aiolos) 1.32793
DENND1B DENN/MADD domain containing 1B 1.32637
PRDM16 PR domain containing 16 1.24235
PLCL2 phospholipase C-like 2 1.21853
MED1 mediator complex subunit 1 1.2121
PRICKLE1 prickle homolog 1 (Drosophila) 1.19025
COL17A1 collagen, type XVII, alpha 1 1.18735
ELMO1 engulfment and cell motility 1 1.18704
TP63 tumor protein p63 1.18278
CDK12 cyclin-dependent kinase 12 1.14999
SDK1 sidekick cell adhesion molecule 1 1.14933
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 1.12474
FBXL20 F-box and leucine-rich repeat protein 20 1.1213
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 1.11716
PAX3 paired box 3 1.10384
GRIK1 glutamate receptor, ionotropic, kainate 1 1.1002
CNTN5 contactin 5 1.09944
GLI3 GLI family zinc finger 3 1.0931
MANBA mannosidase, beta A, lysosomal 1.08879
STAT4 signal transducer and activator of transcription 4 1.04365
CCDC88B coiled-coil domain containing 88B 1.03704
LBH limb bud and heart development 1.00662
HECTD4 HECT domain containing E3 ubiquitin protein ligase 4 0.964112
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.96245
C5ORF30 chromosome 5 open reading frame 30 0.902293
MAPT microtubule-associated protein tau 0.900637
COLEC12 collectin sub-family member 12 0.882344