basement membrane Gene Set

Dataset COMPARTMENTS Curated Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers. (Gene Ontology, GO_0005604)
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Genes

89 proteins localized to the basement membrane cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL4A1 collagen, type IV, alpha 1 0.663342
LAMA2 laminin, alpha 2 0.663342
LAMA1 laminin, alpha 1 0.663342
HSPG2 heparan sulfate proteoglycan 2 0.663342
COL7A1 collagen, type VII, alpha 1 0.663342
TINAG tubulointerstitial nephritis antigen 0.663342
AGRN agrin 0.663342
COL4A6 collagen, type IV, alpha 6 0.663342
COL8A1 collagen, type VIII, alpha 1 0.663342
COL8A2 collagen, type VIII, alpha 2 0.663342
COL4A5 collagen, type IV, alpha 5 0.663342
COL4A4 collagen, type IV, alpha 4 0.663342
ANG angiogenin, ribonuclease, RNase A family, 5 0.663342
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 0.663342
COL4A2 collagen, type IV, alpha 2 0.663342
LAMC2 laminin, gamma 2 0.663342
LAMA3 laminin, alpha 3 0.663342
COL17A1 collagen, type XVII, alpha 1 0.663342
LAMB1 laminin, beta 1 0.663342
LAMB2 laminin, beta 2 (laminin S) 0.663342
NID2 nidogen 2 (osteonidogen) 0.663342
LAMB3 laminin, beta 3 0.663342
NID1 nidogen 1 0.663342
DAG1 dystroglycan 1 (dystrophin-associated glycoprotein 1) 0.663342
FBN1 fibrillin 1 0.663342
THBS4 thrombospondin 4 0.663342
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.663342
LAMA5 laminin, alpha 5 0.663342
LAMA4 laminin, alpha 4 0.663342
LAMC3 laminin, gamma 3 0.663342
LAMB4 laminin, beta 4 0.663342
P3H2 prolyl 3-hydroxylase 2 0.237908
ACHE acetylcholinesterase (Yt blood group) 0.237908
COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 0.237908
LOXL2 lysyl oxidase-like 2 0.237908
APLP1 amyloid beta (A4) precursor-like protein 1 0.237908
EFEMP2 EGF containing fibulin-like extracellular matrix protein 2 0.237908
USH2A Usher syndrome 2A (autosomal recessive, mild) 0.237908
DST dystonin 0.237908
SMC3 structural maintenance of chromosomes 3 0.237908
ERBB2IP erbb2 interacting protein 0.237908
FREM3 FRAS1 related extracellular matrix 3 0.098109
FREM1 FRAS1 related extracellular matrix 1 0.098109
EGFL6 EGF-like-domain, multiple 6 0.098109
NTN4 netrin 4 0.098109
AMTN amelotin 0.098109
VWC2 von Willebrand factor C domain containing 2 0.098109
VWA1 von Willebrand factor A domain containing 1 0.098109
HMCN1 hemicentin 1 0.098109
LAD1 ladinin 1 0.098109
ANXA2 annexin A2 0.098109
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.098109
SMOC1 SPARC related modular calcium binding 1 0.098109
SMOC2 SPARC related modular calcium binding 2 0.098109
COL28A1 collagen, type XXVIII, alpha 1 0.098109
THBS2 thrombospondin 2 0.03318
RELL2 RELT-like 2 0.03318
PAPLN papilin, proteoglycan-like sulfated glycoprotein 0.03318
CST3 cystatin C 0.03318
RUNX1 runt-related transcription factor 1 0.03318
NPNT nephronectin 0.03318
ALB albumin 0.03318
EGFLAM EGF-like, fibronectin type III and laminin G domains 0.03318
COL5A1 collagen, type V, alpha 1 0.03318
TIMP2 TIMP metallopeptidase inhibitor 2 0.03318
TIMP3 TIMP metallopeptidase inhibitor 3 0.03318
RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.03318
COL18A1 collagen, type XVIII, alpha 1 0.03318
ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 0.03318
ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 0.03318
VWA2 von Willebrand factor A domain containing 2 0.03318
ITGB4 integrin, beta 4 0.03318
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.03318
NTN1 netrin 1 0.03318
DLG1 discs, large homolog 1 (Drosophila) 0.03318
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) 0.03318
MMRN2 multimerin 2 0.03318
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 0.03318
SPN sialophorin 0.03318
FREM2 FRAS1 related extracellular matrix protein 2 0.03318
TNC tenascin C 0.03318
TGFBI transforming growth factor, beta-induced, 68kDa 0.03318
FBLN1 fibulin 1 0.03318
FN1 fibronectin 1 0.03318
ITGA6 integrin, alpha 6 0.03318
COL2A1 collagen, type II, alpha 1 0.03318
FGF9 fibroblast growth factor 9 0.03318
CCDC80 coiled-coil domain containing 80 0.03318
TIMP1 TIMP metallopeptidase inhibitor 1 0.03318