basement membrane collagen trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any collagen timer that is part of a basement membrane. (Gene Ontology, GO_0098651)
Similar Terms
Downloads & Tools

Genes

208 proteins co-occuring with the basement membrane collagen trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
NID1 nidogen 1 0.554215
FN1 fibronectin 1 0.553905
NID2 nidogen 2 (osteonidogen) 0.518675
COL18A1 collagen, type XVIII, alpha 1 0.395679
TNC tenascin C 0.30319
LAMB2 laminin, beta 2 (laminin S) 0.217686
COL8A1 collagen, type VIII, alpha 1 0.207536
LRRC17 leucine rich repeat containing 17 0.197413
COL8A2 collagen, type VIII, alpha 2 0.19218
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.155708
COL4A1 collagen, type IV, alpha 1 0.152861
HSPG2 heparan sulfate proteoglycan 2 0.151354
COL6A5 collagen, type VI, alpha 5 0.150856
MMP2 matrix metallopeptidase 2 0.150676
SEBOX SEBOX homeobox 0.150008
TGFB1 transforming growth factor, beta 1 0.147554
COL15A1 collagen, type XV, alpha 1 0.14674
CD44 CD44 molecule (Indian blood group) 0.146432
MMP9 matrix metallopeptidase 9 0.146124
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 0.144917
TGFB2 transforming growth factor, beta 2 0.144892
COL4A5 collagen, type IV, alpha 5 0.144769
PKDCC protein kinase domain containing, cytoplasmic 0.144557
CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 0.144172
SDC2 syndecan 2 0.143665
COL4A4 collagen, type IV, alpha 4 0.143073
MMP1 matrix metallopeptidase 1 0.143003
C1QC complement component 1, q subcomponent, C chain 0.142947
DCN decorin 0.142827
FGF7 fibroblast growth factor 7 0.142792
CFC1 cripto, FRL-1, cryptic family 1 0.142532
COL4A2 collagen, type IV, alpha 2 0.142482
TIMP1 TIMP metallopeptidase inhibitor 1 0.142341
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.142308
TFPI2 tissue factor pathway inhibitor 2 0.141593
TJP1 tight junction protein 1 0.141409
TNFAIP6 tumor necrosis factor, alpha-induced protein 6 0.141324
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.141245
TIMP2 TIMP metallopeptidase inhibitor 2 0.141095
LSAMP limbic system-associated membrane protein 0.140889
PLA2G5 phospholipase A2, group V 0.140853
MATN2 matrilin 2 0.140757
IBSP integrin-binding sialoprotein 0.140703
THBS1 thrombospondin 1 0.14048
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 0.14033
APOD apolipoprotein D 0.140231
ZNF627 zinc finger protein 627 0.140226
CD34 CD34 molecule 0.140203
COL5A2 collagen, type V, alpha 2 0.140073
HIST1H2BN histone cluster 1, H2bn 0.139902
CTGF connective tissue growth factor 0.139892
CBLN1 cerebellin 1 precursor 0.139725
KRT12 keratin 12, type I 0.13965
F8 coagulation factor VIII, procoagulant component 0.13963
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 0.139456
SELL selectin L 0.139445
ALPPL2 alkaline phosphatase, placental-like 2 0.139271
ALPL alkaline phosphatase, liver/bone/kidney 0.139255
SULF1 sulfatase 1 0.139249
ALPP alkaline phosphatase, placental 0.139244
POSTN periostin, osteoblast specific factor 0.139222
UBL7 ubiquitin-like 7 0.139179
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.139163
HAPLN1 hyaluronan and proteoglycan link protein 1 0.139058
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.139031
VWF von Willebrand factor 0.138997
TGFB3 transforming growth factor, beta 3 0.13889
MMP7 matrix metallopeptidase 7 0.138833
CNTN1 contactin 1 0.13877
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain 0.138601
RUNX2 runt-related transcription factor 2 0.138541
PLG plasminogen 0.138494
ALB albumin 0.138433
ITGA6 integrin, alpha 6 0.138274
IGFBP7 insulin-like growth factor binding protein 7 0.138274
KRT3 keratin 3, type II 0.137966
COL11A1 collagen, type XI, alpha 1 0.137947
FBLN1 fibulin 1 0.13779
TGFBI transforming growth factor, beta-induced, 68kDa 0.137777
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.137598
COL5A1 collagen, type V, alpha 1 0.137449
COL4A6 collagen, type IV, alpha 6 0.137332
UBIAD1 UbiA prenyltransferase domain containing 1 0.137207
FBLN2 fibulin 2 0.137192
KRT15 keratin 15, type I 0.137143
ACE angiotensin I converting enzyme 0.137086
PLAT plasminogen activator, tissue 0.136767
VSX1 visual system homeobox 1 0.136731
B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 0.136619
ADM adrenomedullin 0.136596
VCAN versican 0.136551
FGF2 fibroblast growth factor 2 (basic) 0.136345
B3GAT1 beta-1,3-glucuronyltransferase 1 0.136237
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.136229
PCNA proliferating cell nuclear antigen 0.136151
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 0.136032
NOV nephroblastoma overexpressed 0.136008
FANCB Fanconi anemia, complementation group B 0.136
CD68 CD68 molecule 0.135887
COL14A1 collagen, type XIV, alpha 1 0.135847
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.135749
PLAU plasminogen activator, urokinase 0.135338
THY1 Thy-1 cell surface antigen 0.13527
FGF1 fibroblast growth factor 1 (acidic) 0.135209
HBA1 hemoglobin, alpha 1 0.135192
TINAGL1 tubulointerstitial nephritis antigen-like 1 0.13514
BGLAP bone gamma-carboxyglutamate (gla) protein 0.135087
HBA2 hemoglobin, alpha 2 0.135061
EFNA3 ephrin-A3 0.134981
MAP3K5 mitogen-activated protein kinase kinase kinase 5 0.13473
IGBP1 immunoglobulin (CD79A) binding protein 1 0.134676
FBXL20 F-box and leucine-rich repeat protein 20 0.134657
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.134593
CLEC2B C-type lectin domain family 2, member B 0.134313
MMP3 matrix metallopeptidase 3 0.134151
FBN2 fibrillin 2 0.133927
LAMA2 laminin, alpha 2 0.133878
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 0.133809
VEGFA vascular endothelial growth factor A 0.133699
IVL involucrin 0.133351
TYK2 tyrosine kinase 2 0.13333
ITGB7 integrin, beta 7 0.13331
ITGB8 integrin, beta 8 0.133289
ITGB6 integrin, beta 6 0.133278
EDA ectodysplasin A 0.133046
SMAD2 SMAD family member 2 0.132519
KDR kinase insert domain receptor 0.132212
LAMC2 laminin, gamma 2 0.132212
VCL vinculin 0.132072
EMCN endomucin 0.131978
CDK6 cyclin-dependent kinase 6 0.131954
BMP7 bone morphogenetic protein 7 0.13193
IGFBP5 insulin-like growth factor binding protein 5 0.131739
CLDN1 claudin 1 0.131519
CLDN7 claudin 7 0.131382
B3GALTL beta 1,3-galactosyltransferase-like 0.131218
MYOF myoferlin 0.131129
IL6 interleukin 6 0.131064
MPV17 MpV17 mitochondrial inner membrane protein 0.130685
TIMP3 TIMP metallopeptidase inhibitor 3 0.130565
RENBP renin binding protein 0.130429
ITGB4 integrin, beta 4 0.130402
KLK14 kallikrein-related peptidase 14 0.130279
LAMA3 laminin, alpha 3 0.130196
VCAM1 vascular cell adhesion molecule 1 0.130014
ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 0.1299
ICAM1 intercellular adhesion molecule 1 0.129843
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.129814
KRT17 keratin 17, type I 0.12967
IGF1 insulin-like growth factor 1 (somatomedin C) 0.129626
LAMA5 laminin, alpha 5 0.129611
SMAD7 SMAD family member 7 0.129611
ITGA7 integrin, alpha 7 0.129118
GDF10 growth differentiation factor 10 0.12901
MYOC myocilin, trabecular meshwork inducible glucocorticoid response 0.128902
FGF9 fibroblast growth factor 9 0.128886
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.128714
CRYAB crystallin, alpha B 0.128587
ITGA1 integrin, alpha 1 0.128409
PDGFA platelet-derived growth factor alpha polypeptide 0.128393
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.128377
TNF tumor necrosis factor 0.128146
KERA keratocan 0.127723
HBEGF heparin-binding EGF-like growth factor 0.127671
LOX lysyl oxidase 0.127373
MFAP2 microfibrillar-associated protein 2 0.127302
SPP1 secreted phosphoprotein 1 0.126753
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.126583
BGN biglycan 0.126564
FAM195A family with sequence similarity 195, member A 0.126353
HOXB2 homeobox B2 0.126295
IL1B interleukin 1, beta 0.126295
MMP28 matrix metallopeptidase 28 0.126276
KRT14 keratin 14, type I 0.126138
HCCAT5 hepatocellular carcinoma associated transcript 5 (non-protein coding) 0.12596
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.125615
COL12A1 collagen, type XII, alpha 1 0.125574
ETV5 ets variant 5 0.125132
CCL11 chemokine (C-C motif) ligand 11 0.125003
RBP2 retinol binding protein 2, cellular 0.124872
CD79A CD79a molecule, immunoglobulin-associated alpha 0.124718
NCAM1 neural cell adhesion molecule 1 0.124674
CTSD cathepsin D 0.124494
EMX2 empty spiracles homeobox 2 0.124404
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.124011
COL1A1 collagen, type I, alpha 1 0.123964
GIPR gastric inhibitory polypeptide receptor 0.123918
TYMP thymidine phosphorylase 0.12387
EFS embryonal Fyn-associated substrate 0.123846
FLG filaggrin 0.123727
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 0.123509
DSG3 desmoglein 3 0.123484
PLA2R1 phospholipase A2 receptor 1, 180kDa 0.12346
KRT8 keratin 8, type II 0.123362
IGF2 insulin-like growth factor 2 0.123188
PGM5 phosphoglucomutase 5 0.123037
RARA retinoic acid receptor, alpha 0.123037
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 0.122961
LGALS3 lectin, galactoside-binding, soluble, 3 0.122756
CTBS chitobiase, di-N-acetyl- 0.122547
MIB1 mindbomb E3 ubiquitin protein ligase 1 0.122282
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial 0.122065
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 0.122038
GGT2 gamma-glutamyltransferase 2 0.12201
KRT5 keratin 5, type II 0.121956
CSN1S1 casein alpha s1 0.121901
KRT4 keratin 4, type II 0.120899
ACTG1 actin gamma 1 0.120661