apical dendrite Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A dendrite that emerges near the apical pole of a neuron. In bipolar neurons, apical dendrites are located on the opposite side of the soma from the axon. (Gene Ontology, GO_0097440)
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Genes

142 proteins co-occuring with the apical dendrite cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
PVALB parvalbumin 1.31573
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 1.2387
MAP2 microtubule-associated protein 2 1.2387
GRIK1 glutamate receptor, ionotropic, kainate 1 1.20395
RICTOR RPTOR independent companion of MTOR, complex 2 1.16184
RELN reelin 1.10053
BDNF brain-derived neurotrophic factor 1.03879
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 1.03579
NRSN1 neurensin 1 1.01684
RTN4RL2 reticulon 4 receptor-like 2 0.995632
CALB1 calbindin 1, 28kDa 0.97953
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.954483
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 0.943059
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.929833
CA4 carbonic anhydrase IV 0.901818
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.901353
TAOK2 TAO kinase 2 0.871346
DCX doublecortin 0.864447
PLXNA3 plexin A3 0.757707
ABI3BP ABI family, member 3 (NESH) binding protein 0.735565
GRIA2 glutamate receptor, ionotropic, AMPA 2 0.733319
CTBS chitobiase, di-N-acetyl- 0.723026
GRM1 glutamate receptor, metabotropic 1 0.723026
SERF1A small EDRK-rich factor 1A (telomeric) 0.71857
SERF1B small EDRK-rich factor 1B (centromeric) 0.71857
CA1 carbonic anhydrase I 0.701304
GRIA4 glutamate receptor, ionotropic, AMPA 4 0.687701
CALB2 calbindin 2 0.685517
FRMD3 FERM domain containing 3 0.683335
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 0.665096
RTN4RL1 reticulon 4 receptor-like 1 0.662503
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 0.646574
ELL elongation factor RNA polymerase II 0.643144
SYP synaptophysin 0.641858
NRGN neurogranin (protein kinase C substrate, RC3) 0.615013
CHAT choline O-acetyltransferase 0.614589
COX5A cytochrome c oxidase subunit Va 0.591812
GRM5 glutamate receptor, metabotropic 5 0.590553
ACD adrenocortical dysplasia homolog (mouse) 0.589714
CHRNA5 cholinergic receptor, nicotinic, alpha 5 (neuronal) 0.566338
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 0.550186
PPP1R9B protein phosphatase 1, regulatory subunit 9B 0.540294
CA13 carbonic anhydrase XIII 0.534951
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 0.528798
HRASLS5 HRAS-like suppressor family, member 5 0.524294
SEMA3F sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 0.516532
CPN1 carboxypeptidase N, polypeptide 1 0.516124
NRP2 neuropilin 2 0.508383
GMFB glia maturation factor, beta 0.50635
PEX5L peroxisomal biogenesis factor 5-like 0.505131
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.502693
CHL1 cell adhesion molecule L1-like 0.49661
SDF4 stromal cell derived factor 4 0.494585
DPYSL4 dihydropyrimidinase-like 4 0.487307
PRKCG protein kinase C, gamma 0.485693
ADORA1 adenosine A1 receptor 0.48005
PLXNA4 plexin A4 0.476429
SST somatostatin 0.472813
SLC7A4 solute carrier family 7, member 4 0.470005
KCNB2 potassium channel, voltage gated Shab related subfamily B, member 2 0.465598
PRSS12 protease, serine, 12 (neurotrypsin, motopsin) 0.451233
EMX2 empty spiracles homeobox 2 0.437356
SOD1 superoxide dismutase 1, soluble 0.431435
CAMK2G calcium/calmodulin-dependent protein kinase II gamma 0.429859
NEFL neurofilament, light polypeptide 0.40675
GPHN gephyrin 0.40675
RAB8B RAB8B, member RAS oncogene family 0.403248
EMX1 empty spiracles homeobox 1 0.398975
SYN1 synapsin I 0.39626
PLXNA2 plexin A2 0.384665
AKAP5 A kinase (PRKA) anchor protein 5 0.383509
RYR3 ryanodine receptor 3 0.372366
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) 0.368153
TPBG trophoblast glycoprotein 0.367771
POMT1 protein-O-mannosyltransferase 1 0.364713
RGS12 regulator of G-protein signaling 12 0.360133
CNR1 cannabinoid receptor 1 (brain) 0.357467
TMEM245 transmembrane protein 245 0.353662
CX3CR1 chemokine (C-X3-C motif) receptor 1 0.351762
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 0.349105
SLC1A7 solute carrier family 1 (glutamate transporter), member 7 0.348346
MAPT microtubule-associated protein tau 0.343421
KARS lysyl-tRNA synthetase 0.341151
CCR8 chemokine (C-C motif) receptor 8 0.338884
ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 0.338128
KCNC1 potassium channel, voltage gated Shaw related subfamily C, member 1 0.334356
KCNC4 potassium channel, voltage gated Shaw related subfamily C, member 4 0.331719
CNTN6 contactin 6 0.331342
RTN4R reticulon 4 receptor 0.327581
CNTNAP2 contactin associated protein-like 2 0.324951
GJD2 gap junction protein, delta 2, 36kDa 0.323825
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.322325
PTN pleiotrophin 0.317082
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 0.315586
MYO1D myosin ID 0.314839
YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta 0.314839
KCNA2 potassium channel, voltage gated shaker related subfamily A, member 2 0.311851
SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 0.305515
CDK5 cyclin-dependent kinase 5 0.302912
DYNLRB1 dynein, light chain, roadblock-type 1 0.292157
ACHE acetylcholinesterase (Yt blood group) 0.292157
RGS14 regulator of G-protein signaling 14 0.272267
DPYSL3 dihydropyrimidinase-like 3 0.271533
PTOV1 prostate tumor overexpressed 1 0.267871
TGS1 trimethylguanosine synthase 1 0.265311
NTF4 neurotrophin 4 0.265311
DDN dendrin 0.262755
CA3 carbonic anhydrase III 0.25438
NRP1 neuropilin 1 0.254017
STK25 serine/threonine kinase 25 0.252927
FMR1 fragile X mental retardation 1 0.252927
CRMP1 collapsin response mediator protein 1 0.251839
NPAS4 neuronal PAS domain protein 4 0.245685
CRH corticotropin releasing hormone 0.239197
TH tyrosine hydroxylase 0.238837
SYNPR synaptoporin 0.232744
NPY neuropeptide Y 0.230958
IGBP1 immunoglobulin (CD79A) binding protein 1 0.221025
PRKG1 protein kinase, cGMP-dependent, type I 0.220321
GRIK4 glutamate receptor, ionotropic, kainate 4 0.213669
TARP TCR gamma alternate reading frame protein 0.201672
HMOX2 heme oxygenase 2 0.201335
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.197662
CTNND2 catenin (cadherin-associated protein), delta 2 0.196999
SLC30A3 solute carrier family 30 (zinc transporter), member 3 0.195681
DSE dermatan sulfate epimerase 0.195681
APLP1 amyloid beta (A4) precursor-like protein 1 0.192423
SYT3 synaptotagmin III 0.18702
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 0.184853
MKL1 megakaryoblastic leukemia (translocation) 1 0.172201
MAP1A microtubule-associated protein 1A 0.169859
SHANK1 SH3 and multiple ankyrin repeat domains 1 0.168101
OMG oligodendrocyte myelin glycoprotein 0.167856
ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 0.167856
CTNNBIP1 catenin, beta interacting protein 1 0.166643
APLP2 amyloid beta (A4) precursor-like protein 2 0.165231
GRIA3 glutamate receptor, ionotropic, AMPA 3 0.162546
SSTR1 somatostatin receptor 1 0.162546
SORL1 sortilin-related receptor, L(DLR class) A repeats containing 0.161275
MECP2 methyl CpG binding protein 2 0.159268
FKTN fukutin 0.158692
RBM10 RNA binding motif protein 10 0.157943