anchoring collagen complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any collagen complex which links one collagen assembly, such as a collagen fibril or sheet, to other structures. (Gene Ontology, GO_0030934)
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Genes

160 proteins co-occuring with the anchoring collagen complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL14A1 collagen, type XIV, alpha 1 1.75852
COL6A3 collagen, type VI, alpha 3 1.56902
COL21A1 collagen, type XXI, alpha 1 1.56845
COL6A2 collagen, type VI, alpha 2 1.5497
COL6A1 collagen, type VI, alpha 1 1.5017
COL7A1 collagen, type VII, alpha 1 1.4198
COL12A1 collagen, type XII, alpha 1 1.40802
COL18A1 collagen, type XVIII, alpha 1 1.36968
CNDP1 carnosine dipeptidase 1 (metallopeptidase M20 family) 1.17722
RAB42 RAB42, member RAS oncogene family 1.15518
COL19A1 collagen, type XIX, alpha 1 1.13932
COL9A3 collagen, type IX, alpha 3 1.13574
FN1 fibronectin 1 1.11429
COL9A1 collagen, type IX, alpha 1 1.09493
TNC tenascin C 1.02879
SMG8 SMG8 nonsense mediated mRNA decay factor 0.901818
COL6A5 collagen, type VI, alpha 5 0.883782
NID1 nidogen 1 0.879633
DCN decorin 0.817158
MATN2 matrilin 2 0.804772
PKDCC protein kinase domain containing, cytoplasmic 0.738263
FNDC1 fibronectin type III domain containing 1 0.736464
CHRNG cholinergic receptor, nicotinic, gamma (muscle) 0.731973
ITGA1 integrin, alpha 1 0.703949
COL9A2 collagen, type IX, alpha 2 0.700863
CARD10 caspase recruitment domain family, member 10 0.675934
IL26 interleukin 26 0.664664
EMILIN1 elastin microfibril interfacer 1 0.660776
HAPLN1 hyaluronan and proteoglycan link protein 1 0.647003
BGN biglycan 0.629465
CFC1 cripto, FRL-1, cryptic family 1 0.622654
EMILIN2 elastin microfibril interfacer 2 0.612471
CARD16 caspase recruitment domain family, member 16 0.609932
SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 0.609509
ITGB4 integrin, beta 4 0.571745
COL11A1 collagen, type XI, alpha 1 0.568416
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.568416
CEMIP cell migration inducing protein, hyaluronan binding 0.566338
C6 complement component 6 0.562602
COL1A1 collagen, type I, alpha 1 0.560943
CHRND cholinergic receptor, nicotinic, delta (muscle) 0.559285
KERA keratocan 0.549773
CRYM crystallin, mu 0.546885
ACAN aggrecan 0.542764
LAMB2 laminin, beta 2 (laminin S) 0.541117
FBLN2 fibulin 2 0.538238
TNFAIP2 tumor necrosis factor, alpha-induced protein 2 0.521841
TGFBR3 transforming growth factor, beta receptor III 0.516532
VWF von Willebrand factor 0.514085
C11ORF58 chromosome 11 open reading frame 58 0.501476
JAM2 junctional adhesion molecule 2 0.493775
THBS3 thrombospondin 3 0.4865
GSTK1 glutathione S-transferase kappa 1 0.483676
TGFB1 transforming growth factor, beta 1 0.482467
LAMC2 laminin, gamma 2 0.479647
CDK13 cyclin-dependent kinase 13 0.475223
IL1RL1 interleukin 1 receptor-like 1 0.470406
KRTAP1-1 keratin associated protein 1-1 0.458404
CD44 CD44 molecule (Indian blood group) 0.454019
COL1A2 collagen, type I, alpha 2 0.448848
HSPG2 heparan sulfate proteoglycan 2 0.440124
GDF7 growth differentiation factor 7 0.438542
GDF11 growth differentiation factor 11 0.435775
LAMA1 laminin, alpha 1 0.420036
TPBG trophoblast glycoprotein 0.410259
TGFB3 transforming growth factor, beta 3 0.410259
RPL23 ribosomal protein L23 0.406361
VCAN versican 0.402081
FBN1 fibrillin 1 0.385436
LECT1 leukocyte cell derived chemotaxin 1 0.381969
FMOD fibromodulin 0.37045
THBS1 thrombospondin 1 0.361277
KLF9 Kruppel-like factor 9 0.357086
MIA melanoma inhibitory activity 0.354042
ARHGAP4 Rho GTPase activating protein 4 0.348725
ESD esterase D 0.343421
MRI1 methylthioribose-1-phosphate isomerase 1 0.339639
SELL selectin L 0.338128
REM1 RAS (RAD and GEM)-like GTP-binding 1 0.332472
SULF1 sulfatase 1 0.324201
POSTN periostin, osteoblast specific factor 0.322325
CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) 0.31783
TSPY1 testis specific protein, Y-linked 1 0.314091
CRABP1 cellular retinoic acid binding protein 1 0.311478
CSPG4 chondroitin sulfate proteoglycan 4 0.308494
CDK6 cyclin-dependent kinase 6 0.297713
LUM lumican 0.294378
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 0.288091
ENO1 enolase 1, (alpha) 0.287721
TSPY10 testis specific protein, Y-linked 10 0.286983
TSPY3 testis specific protein, Y-linked 3 0.286983
VEGFB vascular endothelial growth factor B 0.286245
SPP1 secreted phosphoprotein 1 0.282926
TNMD tenomodulin 0.278141
DSG3 desmoglein 3 0.277774
COL5A2 collagen, type V, alpha 2 0.276671
NID2 nidogen 2 (osteonidogen) 0.276304
DSG1 desmoglein 1 0.270068
TUBB tubulin, beta class I 0.268969
IGFBP7 insulin-like growth factor binding protein 7 0.26166
NUPR1 nuclear protein, transcriptional regulator, 1 0.258381
SFRP2 secreted frizzled-related protein 2 0.256925
SOX9 SRY (sex determining region Y)-box 9 0.256197
ANTXR1 anthrax toxin receptor 1 0.256197
ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 0.24713
MATN1 matrilin 1, cartilage matrix protein 0.246046
FBLN1 fibulin 1 0.234174
MATN3 matrilin 3 0.233101
RAB3B RAB3B, member RAS oncogene family 0.232744
THBS2 thrombospondin 2 0.223497
COL5A1 collagen, type V, alpha 1 0.216111
B3GAT1 beta-1,3-glucuronyltransferase 1 0.198658
COL17A1 collagen, type XVII, alpha 1 0.197993
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.192423
TGFB2 transforming growth factor, beta 2 0.188905
NEU2 sialidase 2 (cytosolic sialidase) 0.187333
S100B S100 calcium binding protein B 0.18702
FOXJ1 forkhead box J1 0.186708
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 0.186087
SNAI1 snail family zinc finger 1 0.177724
SCX scleraxis basic helix-loop-helix transcription factor 0.177154
MMP7 matrix metallopeptidase 7 0.176587
CFB complement factor B 0.173814
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.173543
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.167856
FGF2 fibroblast growth factor 2 (basic) 0.16342
CX3CL1 chemokine (C-X3-C motif) ligand 1 0.162546
S100A1 S100 calcium binding protein A1 0.16233
CSRP3 cysteine and glycine-rich protein 3 (cardiac LIM protein) 0.162117
PRSS1 protease, serine, 1 (trypsin 1) 0.160863
PAPPA pregnancy-associated plasma protein A, pappalysin 1 0.157039
AMBP alpha-1-microglobulin/bikunin precursor 0.156688
MSX1 msh homeobox 1 0.139206
CD3G CD3g molecule, gamma (CD3-TCR complex) 0.138595
GC group-specific component (vitamin D binding protein) 0.13825
MSX2 msh homeobox 2 0.138055
TBX1 T-box 1 0.137483
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 0.137463
GDF5 growth differentiation factor 5 0.136551
YBX1 Y box binding protein 1 0.136291
KRT17 keratin 17, type I 0.13527
LAMA3 laminin, alpha 3 0.13514
BMP1 bone morphogenetic protein 1 0.134839
CHRD chordin 0.134757
TNS1 tensin 1 0.134547
ANO1 anoctamin 1, calcium activated chloride channel 0.13437
HBE1 hemoglobin, epsilon 1 0.133465
KRT10 keratin 10, type I 0.132553
MSTN myostatin 0.130974
CD79A CD79a molecule, immunoglobulin-associated alpha 0.130361
RUNX2 runt-related transcription factor 2 0.129148
TTN titin 0.126847
FLG filaggrin 0.125175
ALPPL2 alkaline phosphatase, placental-like 2 0.12429
ALPL alkaline phosphatase, liver/bone/kidney 0.124267
ALPP alkaline phosphatase, placental 0.124244
PXN paxillin 0.123263
LOX lysyl oxidase 0.122833
IVL involucrin 0.122677
KRT5 keratin 5, type II 0.121983