abnormality of vitamin metabolism Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description An anomaly in the metabolism of a vitamin. (Human Phenotype Ontology, HP_0100508)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0100508
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Genes

66 genes associated with the abnormality of vitamin metabolism phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
FUT2 fucosyltransferase 2 (secretor status included) 1.95577
GC group-specific component (vitamin D binding protein) 1.90313
NBPF3 neuroblastoma breakpoint family, member 3 1.86166
ALPL alkaline phosphatase, liver/bone/kidney 1.75033
MTHFR methylenetetrahydrofolate reductase (NAD(P)H) 1.5901
TCN1 transcobalamin I (vitamin B12 binding protein, R binder family) 1.41863
CUBN cubilin (intrinsic factor-cobalamin receptor) 1.30781
GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 1.21853
MUT methylmalonyl CoA mutase 1.1784
FIGN fidgetin 1.16177
NADSYN1 NAD synthetase 1 0.705709
CYP2R1 cytochrome P450, family 2, subfamily R, polypeptide 1 0.459219
PKD1L2 polycystic kidney disease 1-like 2 (gene/pseudogene) 0.424648
BUD13 BUD13 homolog (S. cerevisiae) 0.421393
CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2 0.411076
CSMD1 CUB and Sushi multiple domains 1 0.401117
MS4A3 membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) 0.398408
FFAR4 free fatty acid receptor 4 0.395913
PTPRT protein tyrosine phosphatase, receptor type, T 0.38538
ARMC8 armadillo repeat containing 8 0.382321
GATAD2A GATA zinc finger domain containing 2A 0.380972
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) 0.380591
LZTR1 leucine-zipper-like transcription regulator 1 0.377498
PBX4 pre-B-cell leukemia homeobox 4 0.377371
MICA MHC class I polypeptide-related sequence A 0.370761
MACROD2 MACRO domain containing 2 0.370045
CNTN5 contactin 5 0.369884
MNAT1 MNAT CDK-activating kinase assembly factor 1 0.369648
DSCAML1 Down syndrome cell adhesion molecule like 1 0.366593
PROS1 protein S (alpha) 0.365413
TNFRSF8 tumor necrosis factor receptor superfamily, member 8 0.362039
CPS1 carbamoyl-phosphate synthase 1, mitochondrial 0.361125
B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 0.360598
RNF165 ring finger protein 165 0.360367
MYO3B myosin IIIB 0.359589
OPCML opioid binding protein/cell adhesion molecule-like 0.359256
TRPM3 transient receptor potential cation channel, subfamily M, member 3 0.359032
HNF4G hepatocyte nuclear factor 4, gamma 0.358359
MAML3 mastermind-like 3 (Drosophila) 0.35784
GMIP GEM interacting protein 0.357691
CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 0.356835
CLYBL citrate lyase beta like 0.344927
DAB1 Dab, reelin signal transducer, homolog 1 (Drosophila) 0.333518
SCARB1 scavenger receptor class B, member 1 0.332291
NKAIN3 Na+/K+ transporting ATPase interacting 3 0.297392
CYP4F11 cytochrome P450, family 4, subfamily F, polypeptide 11 0.286704
LOC100507144 uncharacterized LOC100507144 0.278715
P3H3 prolyl 3-hydroxylase 3 0.275107
BRAF B-Raf proto-oncogene, serine/threonine kinase 0.275107
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 0.270073
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 0.267081
KMT2C lysine (K)-specific methyltransferase 2C 0.266357
ZNF441 zinc finger protein 441 0.259471
ST6GALNAC5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 0.257976
CTSH cathepsin H 0.257697
MYH11 myosin, heavy chain 11, smooth muscle 0.255031
TMBIM4 transmembrane BAX inhibitor motif containing 4 0.251716
SPARCL1 SPARC-like 1 (hevin) 0.251143
GGH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) 0.248505
ABCC8 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 0.24679
ADGRG5 adhesion G protein-coupled receptor G5 0.246611
SLC44A3 solute carrier family 44, member 3 0.245341
PRMT8 protein arginine methyltransferase 8 0.244439
SPRED2 sprouty-related, EVH1 domain containing 2 0.243099
CHIT1 chitinase 1 (chitotriosidase) 0.2421
ALDH3B1 aldehyde dehydrogenase 3 family, member B1 0.2421