abnormality of the gingiva Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description Any abnormality of the gingiva (also known as gums). (Human Phenotype Ontology, HP_0000168)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0000168
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Genes

51 genes associated with the abnormality of the gingiva phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
TENM2 teneurin transmembrane protein 2 1.04365
OTOF otoferlin 1.00059
FBXO38 F-box protein 38 1.00059
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 0.969142
GRID1 glutamate receptor, ionotropic, delta 1 0.942765
TBC1D1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 0.942765
CAMTA1 calmodulin binding transcription activator 1 0.919744
GLT6D1 glycosyltransferase 6 domain containing 1 0.60335
ADGRE1 adhesion G protein-coupled receptor E1 0.429354
NKAIN2 Na+/K+ transporting ATPase interacting 2 0.429354
BIRC5 baculoviral IAP repeat containing 5 0.424122
TIMP2 TIMP metallopeptidase inhibitor 2 0.413807
WDR73 WD repeat domain 73 0.413807
LBP lipopolysaccharide binding protein 0.413807
THSD4 thrombospondin, type I, domain containing 4 0.413807
IGF2R insulin-like growth factor 2 receptor 0.413807
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.411227
ACTN2 actinin, alpha 2 0.410331
CSMD1 CUB and Sushi multiple domains 1 0.410331
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.408206
ROCK1P1 Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 0.408206
ST20 suppressor of tumorigenicity 20 0.408206
ACTN1 actinin, alpha 1 0.408206
LRP1B low density lipoprotein receptor-related protein 1B 0.406588
SCN2A sodium channel, voltage gated, type II alpha subunit 0.406588
ZNF579 zinc finger protein 579 0.406588
TGIF1 TGFB-induced factor homeobox 1 0.406588
ETNK2 ethanolamine kinase 2 0.406588
ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 0.406588
KCNJ16 potassium channel, inwardly rectifying subfamily J, member 16 0.406588
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 0.406588
PSMA8 proteasome (prosome, macropain) subunit, alpha type, 8 0.406588
FAM126A family with sequence similarity 126, member A 0.405267
NLGN1 neuroligin 1 0.405267
CCDC13 coiled-coil domain containing 13 0.405267
KDM4B lysine (K)-specific demethylase 4B 0.405267
NPAP1 nuclear pore associated protein 1 0.405267
GRIK1 glutamate receptor, ionotropic, kainate 1 0.40409
NKAIN3 Na+/K+ transporting ATPase interacting 3 0.40409
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 0.40409
GPN1 GPN-loop GTPase 1 0.403073
IQSEC1 IQ motif and Sec7 domain 1 0.402866
FOXA1 forkhead box A1 0.402857
ITGA8 integrin, alpha 8 0.402177
FAM135B family with sequence similarity 135, member B 0.402177
HLA-DOA major histocompatibility complex, class II, DO alpha 0.402177
PTPRT protein tyrosine phosphatase, receptor type, T 0.402177
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 0.402177
HS6ST2 heparan sulfate 6-O-sulfotransferase 2 0.402177
CDH13 cadherin 13 0.402177
STARD8 StAR-related lipid transfer (START) domain containing 8 0.40166