abnormality of connective tissue Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description Any abnormality of the soft tissues, including both connective tissue (tendons, ligaments, fascia, fibrous tissues, and fat). (Human Phenotype Ontology, HP_0003549)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0003549
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Genes

60 genes associated with the abnormality of connective tissue phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 1.06089
FTO fat mass and obesity associated 0.510576
IGFBP5 insulin-like growth factor binding protein 5 0.495598
DNAH10 dynein, axonemal, heavy chain 10 0.495598
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 0.474018
ADAMTS9-AS2 ADAMTS9 antisense RNA 2 0.474018
TAF4B TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa 0.450694
SNX29 sorting nexin 29 0.443208
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 0.437499
RORA RAR-related orphan receptor A 0.433116
TSHR thyroid stimulating hormone receptor 0.429354
OPCML opioid binding protein/cell adhesion molecule-like 0.424122
SLC7A10 solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10 0.424122
KCND3 potassium channel, voltage gated Shal related subfamily D, member 3 0.424122
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 0.424122
NR3C2 nuclear receptor subfamily 3, group C, member 2 0.424122
QPCTL glutaminyl-peptide cyclotransferase-like 0.424122
SLC39A11 solute carrier family 39, member 11 0.413807
TP73 tumor protein p73 0.413807
MICA MHC class I polypeptide-related sequence A 0.413807
KCNH5 potassium channel, voltage gated eag related subfamily H, member 5 0.413807
SORBS2 sorbin and SH3 domain containing 2 0.413807
FOXP1 forkhead box P1 0.413807
WDR49 WD repeat domain 49 0.413807
HAPLN1 hyaluronan and proteoglycan link protein 1 0.413807
C6ORF10 chromosome 6 open reading frame 10 0.410331
PCDHA9 protocadherin alpha 9 0.410331
CADM2 cell adhesion molecule 2 0.410331
NSUN2 NOP2/Sun RNA methyltransferase family, member 2 0.410331
TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) 0.410331
ADCY2 adenylate cyclase 2 (brain) 0.408206
PSAT1 phosphoserine aminotransferase 1 0.408206
T T, brachyury homolog (mouse) 0.408206
RREB1 ras responsive element binding protein 1 0.408206
GPC6 glypican 6 0.408206
SLC15A5 solute carrier family 15, member 5 0.406588
ZFAT zinc finger and AT hook domain containing 0.406588
SIK3 SIK family kinase 3 0.406588
SLC22A8 solute carrier family 22 (organic anion transporter), member 8 0.406588
RANBP17 RAN binding protein 17 0.406588
PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 0.406588
RHBG Rh family, B glycoprotein (gene/pseudogene) 0.406588
STXBP6 syntaxin binding protein 6 (amisyn) 0.405267
ITPKB inositol-trisphosphate 3-kinase B 0.405267
BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 0.405267
GPATCH2 G patch domain containing 2 0.405267
ZNF664 zinc finger protein 664 0.40409
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.40409
PEBP4 phosphatidylethanolamine-binding protein 4 0.40409
MYO3B myosin IIIB 0.40409
LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 0.40409
KSR2 kinase suppressor of ras 2 0.403073
LARGE like-glycosyltransferase 0.403073
RPS14 ribosomal protein S14 0.403073
CNTN6 contactin 6 0.402177
SMAD6 SMAD family member 6 0.402177
RORB RAR-related orphan receptor B 0.402177
MYCBPAP MYCBP associated protein 0.402177
CNTNAP2 contactin associated protein-like 2 0.402177
ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 0.402177