abnormal biliary tract morphology Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description A structural abnormality of the biliary tree. (Human Phenotype Ontology, HP_0012440)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0012440
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Genes

83 genes associated with the abnormal biliary tract morphology phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 1.42899
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) 1.07874
IL12RB2 interleukin 12 receptor, beta 2 1.04452
TNPO3 transportin 3 0.931027
TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 0.721836
SPIB Spi-B transcription factor (Spi-1/PU.1 related) 0.64108
RPL3 ribosomal protein L3 0.569428
CLEC16A C-type lectin domain family 16, member A 0.54147
EXOC3L4 exocyst complex component 3-like 4 0.537011
RAD51B RAD51 paralog B 0.504644
TNFSF8 tumor necrosis factor (ligand) superfamily, member 8 0.497626
TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 0.49666
C6ORF10 chromosome 6 open reading frame 10 0.471675
RPS6KA4 ribosomal protein S6 kinase, 90kDa, polypeptide 4 0.456014
ARHGAP31 Rho GTPase activating protein 31 0.455133
TMEM39A transmembrane protein 39A 0.452168
IL7R interleukin 7 receptor 0.445705
WDR70 WD repeat domain 70 0.437124
LOC100506272 uncharacterized LOC100506272 0.434234
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A 0.416272
IKZF3 IKAROS family zinc finger 3 (Aiolos) 0.416272
DENND1B DENN/MADD domain containing 1B 0.416027
PRDM16 PR domain containing 16 0.40658
PLCL2 phospholipase C-like 2 0.403699
MED1 mediator complex subunit 1 0.40299
PRICKLE1 prickle homolog 1 (Drosophila) 0.400511
COL17A1 collagen, type XVII, alpha 1 0.400132
ELMO1 engulfment and cell motility 1 0.400092
DCC DCC netrin 1 receptor 0.399817
TP63 tumor protein p63 0.399532
CDK12 cyclin-dependent kinase 12 0.394267
SDK1 sidekick cell adhesion molecule 1 0.394158
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 0.389412
FBXL20 F-box and leucine-rich repeat protein 20 0.388791
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 0.388001
PAX3 paired box 3 0.385403
GRIK1 glutamate receptor, ionotropic, kainate 1 0.384735
CNTN5 contactin 5 0.384607
HPCAL1 hippocalcin-like 1 0.38356
GLI3 GLI family zinc finger 3 0.383542
MANBA mannosidase, beta A, lysosomal 0.382833
LY86-AS1 LY86 antisense RNA 1 0.379637
CNTN4 contactin 4 0.377459
STAT4 signal transducer and activator of transcription 4 0.376528
CCDC88B coiled-coil domain containing 88B 0.375618
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 0.374943
LBH limb bud and heart development 0.371353
TMEM117 transmembrane protein 117 0.370984
MAMDC2 MAM domain containing 2 0.368423
ITPK1 inositol-tetrakisphosphate 1-kinase 0.368159
HECTD4 HECT domain containing E3 ubiquitin protein ligase 4 0.366539
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.36638
LMF1 lipase maturation factor 1 0.362073
C5ORF30 chromosome 5 open reading frame 30 0.36114
MAPT microtubule-associated protein tau 0.361002
PCBP3 poly(rC) binding protein 3 0.360612
KIAA0825 KIAA0825 0.359537
COLEC12 collectin sub-family member 12 0.359485
ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 0.356888
PLEKHG1 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 0.355415
VWC2L von Willebrand factor C domain containing protein 2-like 0.354048
STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 0.348716
NLRP5 NLR family, pyrin domain containing 5 0.347383
PSD3 pleckstrin and Sec7 domain containing 3 0.346608
ATP10B ATPase, class V, type 10B 0.346566
KIRREL3 kin of IRRE like 3 (Drosophila) 0.345695
PSORS1C1 psoriasis susceptibility 1 candidate 1 0.344892
ADD3 adducin 3 (gamma) 0.344179
TDRD5 tudor domain containing 5 0.340169
AK8 adenylate kinase 8 0.339776
SLC39A11 solute carrier family 39, member 11 0.338783
PRKCA protein kinase C, alpha 0.33619
RORA RAR-related orphan receptor A 0.333667
PRKCE protein kinase C, epsilon 0.333667
HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 0.333446
SLCO3A1 solute carrier organic anion transporter family, member 3A1 0.332718
PGAP1 post-GPI attachment to proteins 1 0.331325
C2ORF66 chromosome 2 open reading frame 66 0.331325
C2ORF54 chromosome 2 open reading frame 54 0.321223
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.318147
GRID1 glutamate receptor, ionotropic, delta 1 0.307746
TGFBR1 transforming growth factor, beta receptor 1 0.299247
DSCAML1 Down syndrome cell adhesion molecule like 1 0.298516