Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9CV-01A-11R-A38B-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Liver hepatocellular carcinoma_LIHC (The Cancer Genome Atlas)
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Genes

235 genes with high or low expression in Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9CV-01A-11R-A38B-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABCD1 ATP-binding cassette, sub-family D (ALD), member 1
ACSL4 acyl-CoA synthetase long-chain family member 4
ACSM4 acyl-CoA synthetase medium-chain family member 4
ADAR adenosine deaminase, RNA-specific
ADCY10 adenylate cyclase 10 (soluble)
AIFM1 apoptosis-inducing factor, mitochondrion-associated, 1
AMBRA1 autophagy/beclin-1 regulator 1
ANKMY1 ankyrin repeat and MYND domain containing 1
ANXA7 annexin A7
ARHGEF16 Rho guanine nucleotide exchange factor (GEF) 16
ASMT acetylserotonin O-methyltransferase
ATG16L1 autophagy related 16-like 1 (S. cerevisiae)
ATG4A autophagy related 4A, cysteine peptidase
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
B2M beta-2-microglobulin
B4GALNT1 beta-1,4-N-acetyl-galactosaminyl transferase 1
C11ORF45 chromosome 11 open reading frame 45
C1GALT1C1 C1GALT1-specific chaperone 1
C1ORF198 chromosome 1 open reading frame 198
C1ORF43 chromosome 1 open reading frame 43
C3ORF62 chromosome 3 open reading frame 62
C4BPA complement component 4 binding protein, alpha
C5AR2 complement component 5a receptor 2
CASP9 caspase 9, apoptosis-related cysteine peptidase
CETN2 centrin, EF-hand protein, 2
CLTCL1 clathrin, heavy chain-like 1
CMPK2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
COG3 component of oligomeric golgi complex 3
CREG1 cellular repressor of E1A-stimulated genes 1
CTC1 CTS telomere maintenance complex component 1
CTPS1 CTP synthase 1
CTR9 CTR9, Paf1/RNA polymerase II complex component
CTSS cathepsin S
CXCL16 chemokine (C-X-C motif) ligand 16
CXORF40B chromosome X open reading frame 40B
CYB5R1 cytochrome b5 reductase 1
CYP2R1 cytochrome P450, family 2, subfamily R, polypeptide 1
DAP3 death associated protein 3
DCX doublecortin
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
DDX60L DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like
DEDD death effector domain containing
DHX58 DEXH (Asp-Glu-X-His) box polypeptide 58
DNMBP-AS1 DNMBP antisense RNA 1
DTX3L deltex 3 like, E3 ubiquitin ligase
EARS2 glutamyl-tRNA synthetase 2, mitochondrial
ENAM enamelin
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5
EPSTI1 epithelial stromal interaction 1 (breast)
ETV3 ets variant 3
FAT1 FAT atypical cadherin 1
FBXO39 F-box protein 39
FLJ26850 FLJ26850 protein
FXR2 fragile X mental retardation, autosomal homolog 2
GDA guanine deaminase
GGNBP1 gametogenetin binding protein 1 (pseudogene)
GOT1 glutamic-oxaloacetic transaminase 1, soluble
GSKIP GSK3B interacting protein
GUCY2F guanylate cyclase 2F, retinal
HELZ2 helicase with zinc finger 2, transcriptional coactivator
HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5
HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
HIRA histone cell cycle regulator
HLA-E major histocompatibility complex, class I, E
HLA-F major histocompatibility complex, class I, F
HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H')
HOXA13 homeobox A13
IARS2 isoleucyl-tRNA synthetase 2, mitochondrial
IBA57 IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)
IDH3G isocitrate dehydrogenase 3 (NAD+) gamma
IDS iduronate 2-sulfatase
IFI44 interferon-induced protein 44
IFI44L interferon-induced protein 44-like
IFI6 interferon, alpha-inducible protein 6
IFIH1 interferon induced with helicase C domain 1
IFIT1 interferon-induced protein with tetratricopeptide repeats 1
IFIT2 interferon-induced protein with tetratricopeptide repeats 2
IFIT3 interferon-induced protein with tetratricopeptide repeats 3
IFIT5 interferon-induced protein with tetratricopeptide repeats 5
IFNA5 interferon, alpha 5
IFNL1 interferon, lambda 1
IL13RA1 interleukin 13 receptor, alpha 1
INTS7 integrator complex subunit 7
IRF9 interferon regulatory factor 9
KCNE5 potassium channel, voltage gated subfamily E regulatory beta subunit 5
KCNH4 potassium channel, voltage gated eag related subfamily H, member 4
KIAA0319L KIAA0319-like
KIF21B kinesin family member 21B
KLHL12 kelch-like family member 12
KRT23 keratin 23, type I
LAMP2 lysosomal-associated membrane protein 2
LCN2 lipocalin 2
LOC728323 uncharacterized LOC728323
LYSMD2 LysM, putative peptidoglycan-binding, domain containing 2
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2
MEF2D myocyte enhancer factor 2D
METTL24 methyltransferase like 24
MIA3 melanoma inhibitory activity family, member 3
MICU2 mitochondrial calcium uptake 2
MID2 midline 2
MINK1 misshapen-like kinase 1
MIS12 MIS12 kinetochore complex component
MOAP1 modulator of apoptosis 1
MRPL49 mitochondrial ribosomal protein L49
MTF1 metal-regulatory transcription factor 1
MTFR1 mitochondrial fission regulator 1
MTM1 myotubularin 1
MUC13 mucin 13, cell surface associated
NBPF3 neuroblastoma breakpoint family, member 3
NCKIPSD NCK interacting protein with SH3 domain
NCSTN nicastrin
NIT1 nitrilase 1
NMBR neuromedin B receptor
NOBOX NOBOX oogenesis homeobox
NUB1 negative regulator of ubiquitin-like proteins 1
OAS1 2'-5'-oligoadenylate synthetase 1, 40/46kDa
OAS2 2'-5'-oligoadenylate synthetase 2, 69/71kDa
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa
OCRL oculocerebrorenal syndrome of Lowe
OMA1 OMA1 zinc metallopeptidase
OR52D1 olfactory receptor, family 52, subfamily D, member 1
OR52I1 olfactory receptor, family 52, subfamily I, member 1
OR5P3 olfactory receptor, family 5, subfamily P, member 3
OSBP oxysterol binding protein
OTUD7B OTU deubiquitinase 7B
PARP12 poly (ADP-ribose) polymerase family, member 12
PARP14 poly (ADP-ribose) polymerase family, member 14
PARP9 poly (ADP-ribose) polymerase family, member 9
PATL2 protein associated with topoisomerase II homolog 2 (yeast)
PDPK1 3-phosphoinositide dependent protein kinase 1
PEX11B peroxisomal biogenesis factor 11 beta
PEX19 peroxisomal biogenesis factor 19
PHF11 PHD finger protein 11
PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid)
PLAA phospholipase A2-activating protein
PLLP plasmolipin
PNKD paroxysmal nonkinesigenic dyskinesia
PNPT1 polyribonucleotide nucleotidyltransferase 1
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
POM121L4P POM121 transmembrane nucleoporin-like 4 pseudogene
PSEN2 presenilin 2
PTPRH protein tyrosine phosphatase, receptor type, H
RANBP10 RAN binding protein 10
RBSN rabenosyn, RAB effector
RETNLB resistin like beta
RFPL3 ret finger protein-like 3
RFX5 regulatory factor X, 5 (influences HLA class II expression)
RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)
RNPEP arginyl aminopeptidase (aminopeptidase B)
RSAD2 radical S-adenosyl methionine domain containing 2
S100A7 S100 calcium binding protein A7
SBF2 SET binding factor 2
SDE2 SDE2 telomere maintenance homolog (S. pombe)
SDHC succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa
SEC16B SEC16 homolog B (S. cerevisiae)
SEMA4G sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
SEPT6 septin 6
SERPINA7 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
SETX senataxin
SH3PXD2A SH3 and PX domains 2A
SHC1 SHC (Src homology 2 domain containing) transforming protein 1
SHISA3 shisa family member 3
SHISA5 shisa family member 5
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2
SLC12A7 solute carrier family 12 (potassium/chloride transporter), member 7
SLC46A1 solute carrier family 46 (folate transporter), member 1
SLC4A10 solute carrier family 4, sodium bicarbonate transporter, member 10
SMG5 SMG5 nonsense mediated mRNA decay factor
SMG7 SMG7 nonsense mediated mRNA decay factor
SPATA1 spermatogenesis associated 1
SRSF1 serine/arginine-rich splicing factor 1
STAR steroidogenic acute regulatory protein
STAT2 signal transducer and activator of transcription 2, 113kDa
TADA1 transcriptional adaptor 1
TAF5L TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa
TARS2 threonyl-tRNA synthetase 2, mitochondrial (putative)
TATDN3 TatD DNase domain containing 3
TDH L-threonine dehydrogenase (pseudogene)
TDRD7 tudor domain containing 7
TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast)
TJP3 tight junction protein 3
TLE6 transducin-like enhancer of split 6
TLN1 talin 1
TM7SF3 transmembrane 7 superfamily member 3
TMBIM1 transmembrane BAX inhibitor motif containing 1
TMEM41A transmembrane protein 41A
TMEM45B transmembrane protein 45B
TMEM50B transmembrane protein 50B
TMEM62 transmembrane protein 62
TMEM9B TMEM9 domain family, member B
TMIGD2 transmembrane and immunoglobulin domain containing 2
TMLHE trimethyllysine hydroxylase, epsilon
TRIM14 tripartite motif containing 14
TRIM21 tripartite motif containing 21
TRIM22 tripartite motif containing 22
TRIM25 tripartite motif containing 25
TRIM34 tripartite motif containing 34
TRIM5 tripartite motif containing 5
TRMT2B tRNA methyltransferase 2 homolog B (S. cerevisiae)
TSNAX translin-associated factor X
TTC39B tetratricopeptide repeat domain 39B
TTC39C tetratricopeptide repeat domain 39C
UBAP1 ubiquitin associated protein 1
UBE2A ubiquitin-conjugating enzyme E2A
UBL4A ubiquitin-like 4A
UBN1 ubinuclein 1
UBQLN1 ubiquilin 1
UBQLNL ubiquilin-like
UBXN10 UBX domain protein 10
UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4
USP18 ubiquitin specific peptidase 18
USP2 ubiquitin specific peptidase 2
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2)
VAMP7 vesicle-associated membrane protein 7
VASH2 vasohibin 2
VCP valosin containing protein
VNN2 vanin 2
WDR44 WD repeat domain 44
WDR5B WD repeat domain 5B
WWP2 WW domain containing E3 ubiquitin protein ligase 2
XAF1 XIAP associated factor 1
ZBTB37 zinc finger and BTB domain containing 37
ZBTB7B zinc finger and BTB domain containing 7B
ZC3H12A zinc finger CCCH-type containing 12A
ZC3HAV1 zinc finger CCCH-type, antiviral 1
ZFAT-AS1 ZFAT antisense RNA 1
ZMYND15 zinc finger, MYND-type containing 15
ZNF684 zinc finger protein 684
ZNF75D zinc finger protein 75D
ZNFX1 zinc finger, NFX1-type containing 1
ZZEF1 zinc finger, ZZ-type with EF-hand domain 1

low expression

Symbol Name
N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative)
SUGP1 SURP and G patch domain containing 1