Lipoproteins, LDL Gene Set

Dataset dbGAP Gene-Trait Associations
Category disease or phenotype associations
Type trait
Description Cholesterol which is contained in or bound to low density lipoproteins (LDL), including CHOLESTEROL ESTERS and free cholesterol. (Experimental Factor Ontology, EFO_0004195)
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Genes

36 genes associated with the trait Lipoproteins, LDL in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.

Symbol Name Standardized Value
CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 1.05405
APOB apolipoprotein B 0.982623
TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) 0.685727
CR1L complement component (3b/4b) receptor 1-like 0.599695
S1PR2 sphingosine-1-phosphate receptor 2 0.536512
IGSF5 immunoglobulin superfamily, member 5 0.503488
FADS3 fatty acid desaturase 3 0.436635
LDLR low density lipoprotein receptor 0.429987
FAM222B family with sequence similarity 222, member B 0.412052
DNM2 dynamin 2 0.405245
FADS1 fatty acid desaturase 1 0.377842
TMEM258 transmembrane protein 258 0.33063
MYRF myelin regulatory factor 0.320302
SIK3 SIK family kinase 3 0.314823
FADS2 fatty acid desaturase 2 0.277643
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 0.258486
EPHA6 EPH receptor A6 0.249025
CR1 complement component (3b/4b) receptor 1 (Knops blood group) 0.246614
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.240911
USP24 ubiquitin specific peptidase 24 0.186971
C19ORF38 chromosome 19 open reading frame 38 0.170352
DOCK7 dedicator of cytokinesis 7 0.154886
PCSK9 proprotein convertase subtilisin/kexin type 9 0.14713
DICER1-AS1 DICER1 antisense RNA 1 0.142723
TRPM3 transient receptor potential cation channel, subfamily M, member 3 0.133482
VTI1A vesicle transport through interaction with t-SNAREs 1A 0.128076
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.109875
GPC6 glypican 6 0.098172
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.083149
COL4A3BP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 0.081204
ABCA5 ATP-binding cassette, sub-family A (ABC1), member 5 0.077586
CARM1 coactivator-associated arginine methyltransferase 1 0.066251
GLIS3 GLIS family zinc finger 3 0.062596
BBC3 BCL2 binding component 3 0.060569
STK32B serine/threonine kinase 32B 0.059114
BCAP29 B-cell receptor-associated protein 29 0.057801