Hippocampal formation Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
Description Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]. (Uber Anatomy Ontology, UBERON_0002421)
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Genes

317 genes with high or low expression in Hippocampal formation relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
PCGF6 polycomb group ring finger 6 1.64113
CAMKK1 calcium/calmodulin-dependent protein kinase kinase 1, alpha 1.6171
ELK1 ELK1, member of ETS oncogene family 1.57509
RPL22 ribosomal protein L22 1.56401
TNRC6C trinucleotide repeat containing 6C 1.53385
IL1R1 interleukin 1 receptor, type I 1.51406
SLC9A2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 1.46072
PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 1.4374
GPR161 G protein-coupled receptor 161 1.4302
SPINK8 serine peptidase inhibitor, Kazal type 8 (putative) 1.38183
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 1.38072
CHRD chordin 1.37624
IQGAP2 IQ motif containing GTPase activating protein 2 1.35508
FIBCD1 fibrinogen C domain containing 1 1.35479
EHD3 EH-domain containing 3 1.35134
EPHA7 EPH receptor A7 1.34901
LATS2 large tumor suppressor kinase 2 1.34823
NMT1 N-myristoyltransferase 1 1.3468
AKT3 v-akt murine thymoma viral oncogene homolog 3 1.33838
CTTN cortactin 1.33366
ARL15 ADP-ribosylation factor-like 15 1.32538
HEBP1 heme binding protein 1 1.32286
RLF rearranged L-myc fusion 1.31205
SIPA1L3 signal-induced proliferation-associated 1 like 3 1.31172
QRICH1 glutamine-rich 1 1.30948
SLC26A4 solute carrier family 26 (anion exchanger), member 4 1.30251
DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33 1.29461
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 1.28561
NR3C2 nuclear receptor subfamily 3, group C, member 2 1.28299
KCNJ6 potassium channel, inwardly rectifying subfamily J, member 6 1.27882
ROGDI rogdi homolog (Drosophila) 1.27127
MMD2 monocyte to macrophage differentiation-associated 2 1.26484
SPNS2 spinster homolog 2 (Drosophila) 1.26424
ARHGAP39 Rho GTPase activating protein 39 1.2594
MFAP3 microfibrillar-associated protein 3 1.25476
MAPK7 mitogen-activated protein kinase 7 1.25252
CRLF1 cytokine receptor-like factor 1 1.24884
LCT lactase 1.24496
CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant 1.23876
TAOK1 TAO kinase 1 1.23591
FYN FYN proto-oncogene, Src family tyrosine kinase 1.23456
RAB3IP RAB3A interacting protein 1.22825
SLC36A2 solute carrier family 36 (proton/amino acid symporter), member 2 1.22471
PKP2 plakophilin 2 1.22359
KLK8 kallikrein-related peptidase 8 1.221
RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 1.22072
PCDH20 protocadherin 20 1.21844
ARPC5 actin related protein 2/3 complex, subunit 5, 16kDa 1.21521
CLOCK clock circadian regulator 1.2149
CCBE1 collagen and calcium binding EGF domains 1 1.21129
DOCK4 dedicator of cytokinesis 4 1.20871
CDH9 cadherin 9, type 2 (T1-cadherin) 1.20703
CPOX coproporphyrinogen oxidase 1.20633
SH3BP5 SH3-domain binding protein 5 (BTK-associated) 1.19212
KCTD4 potassium channel tetramerization domain containing 4 1.19018
WDR61 WD repeat domain 61 1.18877
CACNG8 calcium channel, voltage-dependent, gamma subunit 8 1.18839
RAB8B RAB8B, member RAS oncogene family 1.18483
ORAI2 ORAI calcium release-activated calcium modulator 2 1.18228
FAM188A family with sequence similarity 188, member A 1.17725
TFIP11 tuftelin interacting protein 11 1.1746
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3 1.1723
SERTM1 serine-rich and transmembrane domain containing 1 1.17104
KSR1 kinase suppressor of ras 1 1.16956
FLAD1 flavin adenine dinucleotide synthetase 1 1.16841
TNFRSF25 tumor necrosis factor receptor superfamily, member 25 1.16733
ARHGEF26 Rho guanine nucleotide exchange factor (GEF) 26 1.16544
GABRA5 gamma-aminobutyric acid (GABA) A receptor, alpha 5 1.16373
NEUROD6 neuronal differentiation 6 1.16317
RBM22 RNA binding motif protein 22 1.16088
ELFN2 extracellular leucine-rich repeat and fibronectin type III domain containing 2 1.16079
ABCE1 ATP-binding cassette, sub-family E (OABP), member 1 1.15674
RGS14 regulator of G-protein signaling 14 1.15525
DDHD2 DDHD domain containing 2 1.15464
BTBD9 BTB (POZ) domain containing 9 1.15352
GNG10 guanine nucleotide binding protein (G protein), gamma 10 1.15193
ZBTB16 zinc finger and BTB domain containing 16 1.15089
SH3GL1 SH3-domain GRB2-like 1 1.14962
CLVS2 clavesin 2 1.14949
NBEA neurobeachin 1.14944
ABI1 abl-interactor 1 1.14872
COX20 COX20 cytochrome c oxidase assembly factor 1.14768
PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit 1.14627
STIM2 stromal interaction molecule 2 1.14271
FAM208A family with sequence similarity 208, member A 1.14117
ERN2 endoplasmic reticulum to nucleus signaling 2 1.13634
AK4 adenylate kinase 4 1.13546
NDNL2 necdin-like 2 1.13516
TNFAIP8L3 tumor necrosis factor, alpha-induced protein 8-like 3 1.1312
FBXO34 F-box protein 34 1.13011
FOXG1 forkhead box G1 1.12791
TDO2 tryptophan 2,3-dioxygenase 1.12717
ABHD17C abhydrolase domain containing 17C 1.12414
SLC39A6 solute carrier family 39 (zinc transporter), member 6 1.12104
PORCN porcupine homolog (Drosophila) 1.11555
WBSCR17 Williams-Beuren syndrome chromosome region 17 1.11399
TLE1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) 1.11154
MPV17 MpV17 mitochondrial inner membrane protein 1.11118
FAM220A family with sequence similarity 220, member A 1.10798
PDE11A phosphodiesterase 11A 1.10741
MTMR1 myotubularin related protein 1 1.10481
TOMM34 translocase of outer mitochondrial membrane 34 1.10378
FAM65A family with sequence similarity 65, member A 1.1035
ADCK3 aarF domain containing kinase 3 1.10097
DSP desmoplakin 1.09946
FAM189A1 family with sequence similarity 189, member A1 1.0984
ZDHHC23 zinc finger, DHHC-type containing 23 1.09815
CCDC85A coiled-coil domain containing 85A 1.09417
BRD9 bromodomain containing 9 1.09214
DIO3 deiodinase, iodothyronine, type III 1.08929
GLIS3 GLIS family zinc finger 3 1.08883
SLIT3 slit homolog 3 (Drosophila) 1.08739
FAAH fatty acid amide hydrolase 1.08474
SORBS1 sorbin and SH3 domain containing 1 1.084
PTPRG protein tyrosine phosphatase, receptor type, G 1.08315
PABPC1 poly(A) binding protein, cytoplasmic 1 1.08115
RRAS2 related RAS viral (r-ras) oncogene homolog 2 1.07959
AK5 adenylate kinase 5 1.07955
WASF1 WAS protein family, member 1 1.07886
SEMA3E sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E 1.07866
RNF10 ring finger protein 10 1.0782
C2CD5 C2 calcium-dependent domain containing 5 1.07563
ZNF277 zinc finger protein 277 1.07477
CD40 CD40 molecule, TNF receptor superfamily member 5 1.07371
NFIB nuclear factor I/B 1.07214
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase 1.07073
PRRC1 proline-rich coiled-coil 1 1.06823
UNC5A unc-5 homolog A (C. elegans) 1.06625
EPHA4 EPH receptor A4 1.06578
LRRN2 leucine rich repeat neuronal 2 1.06142
TSPAN13 tetraspanin 13 1.06126
TGFB2 transforming growth factor, beta 2 1.05511
CLSTN2 calsyntenin 2 1.05295
MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 1.05288
NR4A3 nuclear receptor subfamily 4, group A, member 3 1.04946
FOXK1 forkhead box K1 1.04688
BRAF B-Raf proto-oncogene, serine/threonine kinase 1.04608
GSE1 Gse1 coiled-coil protein 1.0459
CNKSR2 connector enhancer of kinase suppressor of Ras 2 1.04556
DIMT1 DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) 1.04018
PYGO1 pygopus family PHD finger 1 1.03865
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 1.03551
LPPR4 lipid phosphate phosphatase-related protein type 4 1.03515
SMAD3 SMAD family member 3 1.03488
NRP1 neuropilin 1 1.03428
PLEKHA2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 1.0336
SSTR4 somatostatin receptor 4 1.03358
SLC44A5 solute carrier family 44, member 5 1.03349
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 1.03127
HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 1.03095
CDC42SE2 CDC42 small effector 2 1.0297
ZER1 zyg-11 related, cell cycle regulator 1.02928
SPATA2 spermatogenesis associated 2 1.02822
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 1.02364
ZEB2 zinc finger E-box binding homeobox 2 1.02325
LGI1 leucine-rich, glioma inactivated 1 1.02205
KLF13 Kruppel-like factor 13 1.01871
SERBP1 SERPINE1 mRNA binding protein 1 1.01843
TPM3 tropomyosin 3 1.01691
KPNA3 karyopherin alpha 3 (importin alpha 4) 1.01627
HDAC1 histone deacetylase 1 1.01621
RPL7 ribosomal protein L7 1.01468
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 1.01405
ADCY9 adenylate cyclase 9 1.013
SEPT9 septin 9 1.01276
SMOC2 SPARC related modular calcium binding 2 1.01253
PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta 1.01081
KCTD6 potassium channel tetramerization domain containing 6 1.00827
GNAQ guanine nucleotide binding protein (G protein), q polypeptide 1.00776
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) 1.00707
DSCAML1 Down syndrome cell adhesion molecule like 1 1.00343
RAP2A RAP2A, member of RAS oncogene family 1.0023
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled 1.00136

low expression

Symbol Name Standardized Value
MMP1 matrix metallopeptidase 1 -1.99195
SPRYD7 SPRY domain containing 7 -1.89191
PBK PDZ binding kinase -1.8654
CCL1 chemokine (C-C motif) ligand 1 -1.85347
TAS2R41 taste receptor, type 2, member 41 -1.83284
GABRR1 gamma-aminobutyric acid (GABA) A receptor, rho 1 -1.73366
RORC RAR-related orphan receptor C -1.56288
MAPK12 mitogen-activated protein kinase 12 -1.52926
CLDN7 claudin 7 -1.50776
ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 -1.50098
FRS3 fibroblast growth factor receptor substrate 3 -1.49986
UTS2 urotensin 2 -1.47824
SLCO1B3 solute carrier organic anion transporter family, member 1B3 -1.46577
SLC5A12 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 -1.44254
ERICH1 glutamate-rich 1 -1.44026
LIPT1 lipoyltransferase 1 -1.4363
AANAT aralkylamine N-acetyltransferase -1.43593
GHRH growth hormone releasing hormone -1.41558
CD48 CD48 molecule -1.41519
OGFOD3 2-oxoglutarate and iron-dependent oxygenase domain containing 3 -1.40532
ANKFN1 ankyrin-repeat and fibronectin type III domain containing 1 -1.40417
IRAK3 interleukin-1 receptor-associated kinase 3 -1.40258
GPR55 G protein-coupled receptor 55 -1.39787
TCF21 transcription factor 21 -1.38241
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 -1.37797
BAIAP2L2 BAI1-associated protein 2-like 2 -1.37066
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2 -1.36959
P2RY14 purinergic receptor P2Y, G-protein coupled, 14 -1.35915
GIPC2 GIPC PDZ domain containing family, member 2 -1.34449
OR4K1 olfactory receptor, family 4, subfamily K, member 1 -1.33129
BCL2 B-cell CLL/lymphoma 2 -1.31435
GPR153 G protein-coupled receptor 153 -1.3132
ZNF516 zinc finger protein 516 -1.31301
TCTEX1D1 Tctex1 domain containing 1 -1.30529
HHATL hedgehog acyltransferase-like -1.30316
WDFY4 WDFY family member 4 -1.29677
MRGPRD MAS-related GPR, member D -1.29598
SLC45A2 solute carrier family 45, member 2 -1.29543
EPO erythropoietin -1.28812
RINL Ras and Rab interactor-like -1.28283
MMP20 matrix metallopeptidase 20 -1.28094
GSTCD glutathione S-transferase, C-terminal domain containing -1.27298
IL1B interleukin 1, beta -1.26591
BMX BMX non-receptor tyrosine kinase -1.26384
OR7C1 olfactory receptor, family 7, subfamily C, member 1 -1.24475
RMDN2 regulator of microtubule dynamics 2 -1.24371
OTOP3 otopetrin 3 -1.23984
ZNF503 zinc finger protein 503 -1.23646
TFPI2 tissue factor pathway inhibitor 2 -1.2363
KLHL25 kelch-like family member 25 -1.23003
FAM151B family with sequence similarity 151, member B -1.22729
GRIA4 glutamate receptor, ionotropic, AMPA 4 -1.22427
EHF ets homologous factor -1.22402
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1 -1.22013
MEFV Mediterranean fever -1.21279
MICAL3 microtubule associated monooxygenase, calponin and LIM domain containing 3 -1.20617
NINJ2 ninjurin 2 -1.20578
TRPM1 transient receptor potential cation channel, subfamily M, member 1 -1.18779
FBXO3 F-box protein 3 -1.18644
SAMD3 sterile alpha motif domain containing 3 -1.18528
ABCC12 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 -1.18176
EGF epidermal growth factor -1.17778
TMEM45A transmembrane protein 45A -1.17712
NCAPG2 non-SMC condensin II complex, subunit G2 -1.17631
KIAA1324L KIAA1324-like -1.17507
CASC1 cancer susceptibility candidate 1 -1.17472
ASB12 ankyrin repeat and SOCS box containing 12 -1.17354
MARVELD3 MARVEL domain containing 3 -1.17259
TPH1 tryptophan hydroxylase 1 -1.17089
CCNO cyclin O -1.16459
UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 -1.16181
EPHX3 epoxide hydrolase 3 -1.15923
POC1B POC1 centriolar protein B -1.15553
MTAP methylthioadenosine phosphorylase -1.15458
GALNT12 polypeptide N-acetylgalactosaminyltransferase 12 -1.15331
SYCP3 synaptonemal complex protein 3 -1.15116
LRRC8A leucine rich repeat containing 8 family, member A -1.14506
PAIP2B poly(A) binding protein interacting protein 2B -1.14369
RNF152 ring finger protein 152 -1.14138
FERMT3 fermitin family member 3 -1.13727
PLD1 phospholipase D1, phosphatidylcholine-specific -1.1336
XPNPEP2 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound -1.13356
GLB1L galactosidase, beta 1-like -1.11246
SLC9A3R2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 -1.11209
RASA4 RAS p21 protein activator 4 -1.10819
SCAPER S-phase cyclin A-associated protein in the ER -1.10704
TRIM50 tripartite motif containing 50 -1.10262
LPIN1 lipin 1 -1.09847
SNAPC2 small nuclear RNA activating complex, polypeptide 2, 45kDa -1.09585
ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif, 10 -1.09491
KCNT1 potassium channel, sodium activated subfamily T, member 1 -1.09471
BHMT2 betaine--homocysteine S-methyltransferase 2 -1.09248
OTX1 orthodenticle homeobox 1 -1.09167
MSL1 male-specific lethal 1 homolog (Drosophila) -1.09142
GPR156 G protein-coupled receptor 156 -1.09103
BLVRA biliverdin reductase A -1.08907
PPP1R3A protein phosphatase 1, regulatory subunit 3A -1.08843
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -1.08528
HOXC6 homeobox C6 -1.08266
ACMSD aminocarboxymuconate semialdehyde decarboxylase -1.08028
SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 -1.07912
PPP3R2 protein phosphatase 3, regulatory subunit B, beta -1.07708
BIRC3 baculoviral IAP repeat containing 3 -1.07486
FKBP6 FK506 binding protein 6, 36kDa -1.0711
SLC8A3 solute carrier family 8 (sodium/calcium exchanger), member 3 -1.06943
KANK3 KN motif and ankyrin repeat domains 3 -1.06791
ZNF384 zinc finger protein 384 -1.06781
UXT ubiquitously-expressed, prefoldin-like chaperone -1.06722
GMNN geminin, DNA replication inhibitor -1.06673
SESN3 sestrin 3 -1.06662
GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 -1.06343
ADORA3 adenosine A3 receptor -1.05912
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2 -1.05847
C20ORF195 chromosome 20 open reading frame 195 -1.0559
OR2T6 olfactory receptor, family 2, subfamily T, member 6 -1.05563
ARHGEF15 Rho guanine nucleotide exchange factor (GEF) 15 -1.05477
FAM83E family with sequence similarity 83, member E -1.0539
MYO10 myosin X -1.05309
FAM127C family with sequence similarity 127, member C -1.05216
MLANA melan-A -1.04947
ART3 ADP-ribosyltransferase 3 -1.04881
MAPK6 mitogen-activated protein kinase 6 -1.04836
DMRT3 doublesex and mab-3 related transcription factor 3 -1.04656
APC2 adenomatosis polyposis coli 2 -1.04322
HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 -1.04274
MGST2 microsomal glutathione S-transferase 2 -1.03878
ZCCHC11 zinc finger, CCHC domain containing 11 -1.03864
TMEM41B transmembrane protein 41B -1.03805
NPC1L1 NPC1-like 1 -1.03775
SNX8 sorting nexin 8 -1.03338
CDHR3 cadherin-related family member 3 -1.01947
C1ORF146 chromosome 1 open reading frame 146 -1.01656
EPB41L3 erythrocyte membrane protein band 4.1-like 3 -1.0152
CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 -1.01419
RAD51C RAD51 paralog C -1.01416
FAM209B family with sequence similarity 209, member B -1.01305
KREMEN2 kringle containing transmembrane protein 2 -1.00997
HOXD10 homeobox D10 -1.00954
TAS2R60 taste receptor, type 2, member 60 -1.00899
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) -1.00862
TBC1D4 TBC1 domain family, member 4 -1.00646
CCR2 chemokine (C-C motif) receptor 2 -1.00293
NOVA1 neuro-oncological ventral antigen 1 -1.00262
CRISP2 cysteine-rich secretory protein 2 -1.00187