HDL cholesterol Gene Set

Dataset GWAS Catalog SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description disease cluster belonging to disease group metabolic (Genetic Association Database)
External Link https://www.ebi.ac.uk/gwas/search?query=HDL cholesterol
Similar Terms
Downloads & Tools

Genes

65 genes associated with the HDL cholesterol phenotype in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
LOC102724766 uncharacterized LOC102724766 2.30709
CETP cholesteryl ester transfer protein, plasma 1.85536
ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 1.67829
PSKH1 protein serine kinase H1 1.58245
ZPR1 ZPR1 zinc finger 1.51787
LOC157273 uncharacterized LOC157273 1.44143
GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 1.43777
HECTD4 HECT domain containing E3 ubiquitin protein ligase 4 1.37364
HNF4A hepatocyte nuclear factor 4, alpha 1.3386
APOB apolipoprotein B 1.29059
F2 coagulation factor II (thrombin) 1.26151
FADS1 fatty acid desaturase 1 1.2394
LPL lipoprotein lipase 1.18826
APOC1 apolipoprotein C-I 1.08247
TTC39B tetratricopeptide repeat domain 39B 1.02384
CMIP c-Maf inducing protein 1.02384
PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) 0.969518
UBE2L3 ubiquitin-conjugating enzyme E2L 3 0.964741
STARD3 StAR-related lipid transfer (START) domain containing 3 0.932983
TRPS1 trichorhinophalangeal syndrome I 0.927754
DOCK6 dedicator of cytokinesis 6 0.923741
NUTF2 nuclear transport factor 2 0.867622
SLC39A8 solute carrier family 39 (zinc transporter), member 8 0.863028
COBLL1 cordon-bleu WH2 repeat protein-like 1 0.849268
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.824605
FPR3 formyl peptide receptor 3 0.750033
R3HDM2 R3H domain containing 2 0.750033
TBL2 transducin (beta)-like 2 0.729497
ABCA8 ATP-binding cassette, sub-family A (ABC1), member 8 0.713153
FAM13A family with sequence similarity 13, member A 0.679413
DAGLB diacylglycerol lipase, beta 0.669182
RBM5 RNA binding motif protein 5 0.658916
SNX13 sorting nexin 13 0.658916
PGS1 phosphatidylglycerophosphate synthase 1 0.637972
PVRL2 poliovirus receptor-related 2 (herpesvirus entry mediator B) 0.598838
STAB1 stabilin 1 0.595536
KCTD10 potassium channel tetramerization domain containing 10 0.592545
MARCH8 membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase 0.572839
SIK3 SIK family kinase 3 0.560615
ARL15 ADP-ribosylation factor-like 15 0.534343
CPS1 carbamoyl-phosphate synthase 1, mitochondrial 0.526478
PEPD peptidase D 0.483518
PCIF1 PDX1 C-terminal inhibiting factor 1 0.472799
SETD2 SET domain containing 2 0.472799
DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13 0.463473
FTO fat mass and obesity associated 0.449549
C1ORF220 chromosome 1 open reading frame 220 0.449549
SBNO1 strawberry notch homolog 1 (Drosophila) 0.444144
GSK3B glycogen synthase kinase 3 beta 0.434785
RAB11B RAB11B, member RAS oncogene family 0.434785
RRNAD1 ribosomal RNA adenine dimethylase domain containing 1 0.405958
ANGPTL4 angiopoietin-like 4 0.405958
AOC1 amine oxidase, copper containing 1 0.405958
PCNXL3 pecanex-like 3 (Drosophila) 0.389385
DPEP3 dipeptidase 3 0.389385
NR1H3 nuclear receptor subfamily 1, group H, member 3 0.377988
CAND1.11 uncharacterized LOC100130460 0.369252
ATG7 autophagy related 7 0.369252
LOC100507053 uncharacterized LOC100507053 0.369252
DPEP2 dipeptidase 2 0.342586
GFOD2 glucose-fructose oxidoreductase domain containing 2 0.314454
TOMM40 translocase of outer mitochondrial membrane 40 homolog (yeast) 0.280662
MYO1H myosin IH 0.129504
FADS2 fatty acid desaturase 2 0.104568
OAS3 2'-5'-oligoadenylate synthetase 3, 100kDa 0.070053