Brain Lower Grade Glioma_LGG_TCGA-VM-A8CH-01A-12R-A36H-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

218 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-VM-A8CH-01A-12R-A36H-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ACOX1 acyl-CoA oxidase 1, palmitoyl
ADAMDEC1 ADAM-like, decysin 1
ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20
ADNP2 ADNP homeobox 2
AHCTF1 AT hook containing transcription factor 1
ALLC allantoicase
AMICA1 adhesion molecule, interacts with CXADR antigen 1
ANGPTL3 angiopoietin-like 3
ANKDD1A ankyrin repeat and death domain containing 1A
AOC2 amine oxidase, copper containing 2 (retina-specific)
APPBP2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2
BRD7P3 bromodomain containing 7 pseudogene 3
C1ORF146 chromosome 1 open reading frame 146
C20ORF203 chromosome 20 open reading frame 203
C2ORF57 chromosome 2 open reading frame 57
C7ORF60 chromosome 7 open reading frame 60
C8B complement component 8, beta polypeptide
CASZ1 castor zinc finger 1
CATSPERG catsper channel auxiliary subunit gamma
CCDC102B coiled-coil domain containing 102B
CCDC43 coiled-coil domain containing 43
CCL24 chemokine (C-C motif) ligand 24
CD163L1 CD163 molecule-like 1
CDK8 cyclin-dependent kinase 8
CDKN2B cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)
CDYL chromodomain protein, Y-like
CEACAM18 carcinoembryonic antigen-related cell adhesion molecule 18
CLEC10A C-type lectin domain family 10, member A
CNKSR3 CNKSR family member 3
COASY CoA synthase
CPSF4L cleavage and polyadenylation specific factor 4-like
CRHR1-IT1 CRHR1 intronic transcript 1
CSF1 colony stimulating factor 1 (macrophage)
CSRP2 cysteine and glycine-rich protein 2
CYCSP52 cytochrome c, somatic pseudogene 52
CYP2S1 cytochrome P450, family 2, subfamily S, polypeptide 1
CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43
DCAKD dephospho-CoA kinase domain containing
DCDC2B doublecortin domain containing 2B
DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42
DGAT2L6 diacylglycerol O-acyltransferase 2-like 6
DKFZP434J0226 uncharacterized LOC93429
DLX4 distal-less homeobox 4
DNASE1L3 deoxyribonuclease I-like 3
EDN1 endothelin 1
EPOR erythropoietin receptor
EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit
FAM106A family with sequence similarity 106, member A
FAM118A family with sequence similarity 118, member A
FAM157A family with sequence similarity 157, member A
FAM170A family with sequence similarity 170, member A
FAM182A family with sequence similarity 182, member A
FAM182B family with sequence similarity 182, member B
FAM212B family with sequence similarity 212, member B
FBXO42 F-box protein 42
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase)
GAGE10 G antigen 10
GGNBP2 gametogenetin binding protein 2
GOLGA6L10 golgin A6 family-like 10
GOLGA6L5P golgin A6 family-like 5, pseudogene
GP1BA glycoprotein Ib (platelet), alpha polypeptide
GRHL3 grainyhead-like 3 (Drosophila)
H3F3B H3 histone, family 3B (H3.3B)
HCG9 HLA complex group 9 (non-protein coding)
HELZ helicase with zinc finger
HEPHL1 hephaestin-like 1
HRNR hornerin
HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
IGFL2 IGF-like family member 2
INTS12 integrator complex subunit 12
IPO5 importin 5
IQCF5 IQ motif containing F5
IRF2BP2 interferon regulatory factor 2 binding protein 2
JADE1 jade family PHD finger 1
KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2
KLHL28 kelch-like family member 28
KRT24 keratin 24, type I
KRT37 keratin 37, type I
LAMB2P1 laminin, beta 2 pseudogene 1
LCORL ligand dependent nuclear receptor corepressor-like
LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5
LINC00032 long intergenic non-protein coding RNA 32
LINC00238 long intergenic non-protein coding RNA 238
LOC100126784 uncharacterized LOC100126784
LOC100129055 cyclin Y-like 1 pseudogene
LOC440040 glutamate receptor, metabotropic 5 pseudogene
LOC647859 occludin pseudogene
LOC729603 calcineurin-like EF-hand protein 1 pseudogene
LRIG1 leucine-rich repeats and immunoglobulin-like domains 1
LRRC1 leucine rich repeat containing 1
MAPT microtubule-associated protein tau
MED24 mediator complex subunit 24
MEFV Mediterranean fever
MPEG1 macrophage expressed 1
MRC1 mannose receptor, C type 1
MSL1 male-specific lethal 1 homolog (Drosophila)
MSTN myostatin
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
NAV2 neuron navigator 2
NBPF14 neuroblastoma breakpoint family, member 14
NBPF7 neuroblastoma breakpoint family, member 7
NBR1 neighbor of BRCA1 gene 1
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
NMB neuromedin B
NME1-NME2 NME1-NME2 readthrough
NOX1 NADPH oxidase 1
NT5DC3 5'-nucleotidase domain containing 3
NXPH3 neurexophilin 3
OPHN1 oligophrenin 1
OR13D1 olfactory receptor, family 13, subfamily D, member 1
OR1L4 olfactory receptor, family 1, subfamily L, member 4
OR52L1 olfactory receptor, family 52, subfamily L, member 1
OR52N2 olfactory receptor, family 52, subfamily N, member 2
OR5AK2 olfactory receptor, family 5, subfamily AK, member 2
OR5B12 olfactory receptor, family 5, subfamily B, member 12
ORMDL3 ORMDL sphingolipid biosynthesis regulator 3
OSBPL11 oxysterol binding protein-like 11
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1
PATE4 prostate and testis expressed 4
PCCA propionyl CoA carboxylase, alpha polypeptide
PCDH15 protocadherin-related 15
PCDHB4 protocadherin beta 4
PCDHB7 protocadherin beta 7
PCDHGB6 protocadherin gamma subfamily B, 6
PCTP phosphatidylcholine transfer protein
PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime
PDE8A phosphodiesterase 8A
PHC3 polyhomeotic homolog 3 (Drosophila)
PHF21A PHD finger protein 21A
PLEKHM1 pleckstrin homology domain containing, family M (with RUN domain) member 1
POLG2 polymerase (DNA directed), gamma 2, accessory subunit
PPM1B protein phosphatase, Mg2+/Mn2+ dependent, 1B
PPP3CC protein phosphatase 3, catalytic subunit, gamma isozyme
PPTC7 PTC7 protein phosphatase homolog (S. cerevisiae)
PRB4 proline-rich protein BstNI subfamily 4
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit
PRR23C proline rich 23C
PRSS21 protease, serine, 21 (testisin)
RANBP6 RAN binding protein 6
RARA retinoic acid receptor, alpha
RASD1 RAS, dexamethasone-induced 1
RCOR1 REST corepressor 1
RDH16 retinol dehydrogenase 16 (all-trans)
REM2 RAS (RAD and GEM)-like GTP binding 2
RGS9BP regulator of G protein signaling 9 binding protein
RGSL1 regulator of G-protein signaling like 1
RNF183 ring finger protein 183
RSAD1 radical S-adenosyl methionine domain containing 1
SGK3 serum/glucocorticoid regulated kinase family, member 3
SIGLEC12 sialic acid binding Ig-like lectin 12 (gene/pseudogene)
SIGLEC5 sialic acid binding Ig-like lectin 5
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2
SLC26A11 solute carrier family 26 (anion exchanger), member 11
SLC36A3 solute carrier family 36, member 3
SLC39A14 solute carrier family 39 (zinc transporter), member 14
SNORA11D small nucleolar RNA, H/ACA box 11D
SNORA12 small nucleolar RNA, H/ACA box 12
SNORA2A small nucleolar RNA, H/ACA box 2A
SNORA37 small nucleolar RNA, H/ACA box 37
SNORA56 small nucleolar RNA, H/ACA box 56
SNORA6 small nucleolar RNA, H/ACA box 6
SNORA8 small nucleolar RNA, H/ACA box 8
SNORD115-7 small nucleolar RNA, C/D box 115-7
SNRNP48 small nuclear ribonucleoprotein 48kDa (U11/U12)
SNX16 sorting nexin 16
SNX29P2 sorting nexin 29 pseudogene 2
SPAG9 sperm associated antigen 9
SPO11 SPO11 meiotic protein covalently bound to DSB
STAT5B signal transducer and activator of transcription 5B
STK17B serine/threonine kinase 17b
STRADA STE20-related kinase adaptor alpha
SYCP2L synaptonemal complex protein 2-like
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
TAS2R20 taste receptor, type 2, member 20
TAS2R42 taste receptor, type 2, member 42
TBC1D3 TBC1 domain family, member 3
TCEB3C transcription elongation factor B polypeptide 3C (elongin A3)
TFAMP1 transcription factor A, mitochondrial pseudogene 1
TIGD1 tigger transposable element derived 1
TLK2 tousled-like kinase 2
TMCC1 transmembrane and coiled-coil domain family 1
TMEM100 transmembrane protein 100
TMPRSS12 transmembrane (C-terminal) protease, serine 12
TOB2 transducer of ERBB2, 2
TOP1P2 topoisomerase (DNA) I pseudogene 2
TPRX1 tetra-peptide repeat homeobox 1
TRMT11 tRNA methyltransferase 11 homolog (S. cerevisiae)
TTLL13P tubulin tyrosine ligase-like family member 13, pseudogene
UBAP2 ubiquitin associated protein 2
USP44 ubiquitin specific peptidase 44
VN1R5 vomeronasal 1 receptor 5 (gene/pseudogene)
WDR45B WD repeat domain 45B
XYLT2 xylosyltransferase II
YOD1 YOD1 deubiquitinase
ZBTB5 zinc finger and BTB domain containing 5
ZFAND4 zinc finger, AN1-type domain 4
ZIC3 Zic family member 3
ZNF189 zinc finger protein 189
ZNF284 zinc finger protein 284
ZNF330 zinc finger protein 330
ZNF549 zinc finger protein 549
ZNF589 zinc finger protein 589
ZNF652 zinc finger protein 652
ZNF708 zinc finger protein 708
ZNF77 zinc finger protein 77
ZNF830 zinc finger protein 830
ZNF836 zinc finger protein 836
ZNRF3 zinc and ring finger 3
ZSCAN12 zinc finger and SCAN domain containing 12
ZSCAN4 zinc finger and SCAN domain containing 4
ZSWIM6 zinc finger, SWIM-type containing 6

low expression

Symbol Name
ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
BTBD18 BTB (POZ) domain containing 18
KDM8 lysine (K)-specific demethylase 8
NCOA5 nuclear receptor coactivator 5
NDUFAF6 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
NEK9 NIMA-related kinase 9