Brain Lower Grade Glioma_LGG_TCGA-TM-A84L-01A-11R-A36H-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

305 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-TM-A84L-01A-11R-A36H-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
A4GNT alpha-1,4-N-acetylglucosaminyltransferase
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
ABLIM3 actin binding LIM protein family, member 3
ACADVL acyl-CoA dehydrogenase, very long chain
ACSM5 acyl-CoA synthetase medium-chain family member 5
ACY3 aminoacylase 3
ADAD1 adenosine deaminase domain containing 1 (testis-specific)
ADD3 adducin 3 (gamma)
ADGRG7 adhesion G protein-coupled receptor G7
AGAP7P ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene
AKR7A2P1 aldo-keto reductase family 7, member A2 pseudogene 1
AMOT angiomotin
ANGPTL3 angiopoietin-like 3
ANKDD1A ankyrin repeat and death domain containing 1A
ANKRD33 ankyrin repeat domain 33
ANXA8L1 annexin A8-like 1
AP1G2 adaptor-related protein complex 1, gamma 2 subunit
AQP7 aquaporin 7
AQP7P1 aquaporin 7 pseudogene 1
AQP7P3 aquaporin 7 pseudogene 3
ARHGAP27 Rho GTPase activating protein 27
ARHGEF1 Rho guanine nucleotide exchange factor (GEF) 1
ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
ASB10 ankyrin repeat and SOCS box containing 10
ASB17 ankyrin repeat and SOCS box containing 17
ASCL4 achaete-scute family bHLH transcription factor 4
ATG16L2 autophagy related 16-like 2 (S. cerevisiae)
ATP11AUN ATP11A upstream neighbor
BPIFA2 BPI fold containing family A, member 2
C10ORF91 chromosome 10 open reading frame 91
C20ORF173 chromosome 20 open reading frame 173
C8A complement component 8, alpha polypeptide
C8G complement component 8, gamma polypeptide
C9ORF106 chromosome 9 open reading frame 106
CAPNS2 calpain, small subunit 2
CAPZA3 capping protein (actin filament) muscle Z-line, alpha 3
CARD14 caspase recruitment domain family, member 14
CATSPER4 cation channel, sperm associated 4
CATSPERG catsper channel auxiliary subunit gamma
CCDC183 coiled-coil domain containing 183
CCL3 chemokine (C-C motif) ligand 3
CCL3L1 chemokine (C-C motif) ligand 3-like 1
CCL3L3 chemokine (C-C motif) ligand 3-like 3
CCL4 chemokine (C-C motif) ligand 4
CCL4L2 chemokine (C-C motif) ligand 4-like 2
CDH15 cadherin 15, type 1, M-cadherin (myotubule)
CDR1 cerebellar degeneration-related protein 1, 34kDa
CEACAM18 carcinoembryonic antigen-related cell adhesion molecule 18
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon
CH25H cholesterol 25-hydroxylase
CLDN25 claudin 25
CNGA1 cyclic nucleotide gated channel alpha 1
COL22A1 collagen, type XXII, alpha 1
COL4A6 collagen, type IV, alpha 6
CRYBB3 crystallin, beta B3
CRYGC crystallin, gamma C
CSN2 casein beta
CT55 cancer/testis antigen 55
CTSH cathepsin H
CYB561A3 cytochrome b561 family, member A3
CYP2B7P cytochrome P450, family 2, subfamily B, polypeptide 7, pseudogene
CYP3A43 cytochrome P450, family 3, subfamily A, polypeptide 43
DCAF8L1 DDB1 and CUL4 associated factor 8-like 1
DDO D-aspartate oxidase
DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
DHRS9 dehydrogenase/reductase (SDR family) member 9
DIO1 deiodinase, iodothyronine, type I
DISC2 disrupted in schizophrenia 2 (non-protein coding)
DMPK dystrophia myotonica-protein kinase
DNAH7 dynein, axonemal, heavy chain 7
DNASE1L2 deoxyribonuclease I-like 2
DOCK8 dedicator of cytokinesis 8
DTX4 deltex 4, E3 ubiquitin ligase
DUOX1 dual oxidase 1
DUOXA1 dual oxidase maturation factor 1
DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2
EGR3 early growth response 3
EML6 echinoderm microtubule associated protein like 6
EPOR erythropoietin receptor
EPPK1 epiplakin 1
ERAS ES cell expressed Ras
ERBB2IP erbb2 interacting protein
ERC2-IT1 ERC2 intronic transcript 1
ERVFRD-1 endogenous retrovirus group FRD, member 1
EZR ezrin
FAM118A family with sequence similarity 118, member A
FAM170B family with sequence similarity 170, member B
FAM183B acyloxyacyl hydrolase (neutrophil)
FAM189A2 family with sequence similarity 189, member A2
FAM71F2 family with sequence similarity 71, member F2
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
FGD2 FYVE, RhoGEF and PH domain containing 2
FIGF c-fos induced growth factor (vascular endothelial growth factor D)
FKSG29 FKSG29
FRG2 FSHD region gene 2
FRG2B FSHD region gene 2 family, member B
FRG2C FSHD region gene 2 family, member C
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase)
GATS GATS, stromal antigen 3 opposite strand
GDF2 growth differentiation factor 2
GFAP glial fibrillary acidic protein
GHSR growth hormone secretagogue receptor
GJB7 gap junction protein, beta 7, 25kDa
GLIS3-AS1 GLIS3 antisense RNA 1
GRK1 G protein-coupled receptor kinase 1
GTF2H2B general transcription factor IIH, polypeptide 2B (pseudogene)
GUCY2EP guanylate cyclase 2E, pseudogene
H1FNT H1 histone family, member N, testis-specific
H2BFWT H2B histone family, member W, testis-specific
HERC2P2 hect domain and RLD 2 pseudogene 2
HEXIM1 hexamethylene bis-acetamide inducible 1
HEY2 hes-related family bHLH transcription factor with YRPW motif 2
HGFAC HGF activator
HIST1H1E histone cluster 1, H1e
HIST1H4E histone cluster 1, H4e
HIST1H4F histone cluster 1, H4f
HPYR1 Helicobacter pylori responsive 1 (non-protein coding)
HSD17B14 hydroxysteroid (17-beta) dehydrogenase 14
IDNK idnK, gluconokinase homolog (E. coli)
IL13 interleukin 13
IL5 interleukin 5
IL9 interleukin 9
ILDR1 immunoglobulin-like domain containing receptor 1
INPPL1 inositol polyphosphate phosphatase-like 1
IRAK1 interleukin-1 receptor-associated kinase 1
IRF8 interferon regulatory factor 8
ITIH4 inter-alpha-trypsin inhibitor heavy chain family, member 4
IZUMO1 izumo sperm-egg fusion 1
KDM4E lysine (K)-specific demethylase 4E
KIAA0226 KIAA0226
KLHL5 kelch-like family member 5
KLKP1 kallikrein pseudogene 1
KRT33A keratin 33A, type I
KRT37 keratin 37, type I
LCNL1 lipocalin-like 1
LEFTY1 left-right determination factor 1
LILRP2 leukocyte immunoglobulin-like receptor pseudogene 2
LINC00051 long intergenic non-protein coding RNA 51
LINC00264 long intergenic non-protein coding RNA 264
LOC285593 uncharacterized LOC285593
LOC647859 occludin pseudogene
LOC728392 uncharacterized LOC728392
LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4
LTBP4 latent transforming growth factor beta binding protein 4
LTC4S leukotriene C4 synthase
LYG2 lysozyme G-like 2
LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
M1AP meiosis 1 associated protein
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog
MAMDC2 MAM domain containing 2
MAP4 microtubule-associated protein 4
MGC15885 uncharacterized protein MGC15885
MID1IP1 MID1 interacting protein 1
MKNK1 MAP kinase interacting serine/threonine kinase 1
MYF5 myogenic factor 5
MYLK4 myosin light chain kinase family, member 4
MYO15B myosin XVB
MYO7A myosin VIIA
NANOG Nanog homeobox
NCKAP5L NCK-associated protein 5-like
NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding)
NEK1 NIMA-related kinase 1
NFKBID nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta
NLRP1 NLR family, pyrin domain containing 1
NOD2 nucleotide-binding oligomerization domain containing 2
NR2F1 nuclear receptor subfamily 2, group F, member 1
NRBP2 nuclear receptor binding protein 2
NRROS negative regulator of reactive oxygen species
NTN5 netrin 5
NXF2B nuclear RNA export factor 2B
NXF5 nuclear RNA export factor 5
ODF4 outer dense fiber of sperm tails 4
OPN1LW opsin 1 (cone pigments), long-wave-sensitive
OR10H3 olfactory receptor, family 10, subfamily H, member 3
OR11G2 olfactory receptor, family 11, subfamily G, member 2
OR11H12 olfactory receptor, family 11, subfamily H, member 12
OR13J1 olfactory receptor, family 13, subfamily J, member 1
OR1L4 olfactory receptor, family 1, subfamily L, member 4
OR51I2 olfactory receptor, family 51, subfamily I, member 2
OR51M1 olfactory receptor, family 51, subfamily M, member 1
OR52A4P olfactory receptor, family 52, subfamily A, member 4, pseudogene
OR52A5 olfactory receptor, family 52, subfamily A, member 5
OR52I1 olfactory receptor, family 52, subfamily I, member 1
OR5AC2 olfactory receptor, family 5, subfamily AC, member 2
OTUD1 OTU deubiquitinase 1
P2RY13 purinergic receptor P2Y, G-protein coupled, 13
PATL2 protein associated with topoisomerase II homolog 2 (yeast)
PAX4 paired box 4
PCDHGB7 protocadherin gamma subfamily B, 7
PDE8A phosphodiesterase 8A
PDE8B phosphodiesterase 8B
PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2
PLG plasminogen
PLXNB1 plexin B1
PM20D1 peptidase M20 domain containing 1
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2
POU5F2 POU domain class 5, transcription factor 2
PPP1R14D protein phosphatase 1, regulatory (inhibitor) subunit 14D
PPP1R2P9 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9
PRICKLE4 prickle homolog 4 (Drosophila)
PRKACG protein kinase, cAMP-dependent, catalytic, gamma
PRR5-ARHGAP8 PRR5-ARHGAP8 readthrough
PRR5L proline rich 5 like
PTPRVP protein tyrosine phosphatase, receptor type, V, pseudogene
PTTG2 pituitary tumor-transforming 2
RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated)
RENBP renin binding protein
RET ret proto-oncogene
RFX6 regulatory factor X, 6
RGL3 ral guanine nucleotide dissociation stimulator-like 3
RGS11 regulator of G-protein signaling 11
RGS21 regulator of G-protein signaling 21
RHOXF1 Rhox homeobox family, member 1
RMDN1 regulator of microtubule dynamics 1
RMRP RNA component of mitochondrial RNA processing endoribonuclease
RNF113B ring finger protein 113B
RNF39 ring finger protein 39
RTP3 receptor (chemosensory) transporter protein 3
SCARNA1 small Cajal body-specific RNA 1
SCARNA2 small Cajal body-specific RNA 2
SCARNA7 small Cajal body-specific RNA 7
SDHAF3 succinate dehydrogenase complex assembly factor 3
SERINC4 serine incorporator 4
SERPINA11 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4
SGSM2 small G protein signaling modulator 2
SIGLEC11 sialic acid binding Ig-like lectin 11
SIGLEC16 sialic acid binding Ig-like lectin 16 (gene/pseudogene)
SLC36A3 solute carrier family 36, member 3
SLC4A9 solute carrier family 4, sodium bicarbonate cotransporter, member 9
SLC51A solute carrier family 51, alpha subunit
SLC7A13 solute carrier family 7 (anionic amino acid transporter), member 13
SLC7A5P2 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2
SLMO1 slowmo homolog 1 (Drosophila)
SNORA16A small nucleolar RNA, H/ACA box 16A
SNORA24 small nucleolar RNA, H/ACA box 24
SNORA25 small nucleolar RNA, H/ACA box 25
SNORA41 small nucleolar RNA, H/ACA box 41
SNORA45A small nucleolar RNA, H/ACA box 45A
SNORA52 small nucleolar RNA, H/ACA box 52
SNORA55 small nucleolar RNA, H/ACA box 55
SNORA57 small nucleolar RNA, H/ACA box 57
SNORA6 small nucleolar RNA, H/ACA box 6
SNORA64 small nucleolar RNA, H/ACA box 64
SNORA71A small nucleolar RNA, H/ACA box 71A
SNORA78 small nucleolar RNA, H/ACA box 78
SNORD17 small nucleolar RNA, C/D box 17
SNORD94 small nucleolar RNA, C/D box 94
SNX20 sorting nexin 20
SORBS1 sorbin and SH3 domain containing 1
SPANXC SPANX family, member C
SPATC1 spermatogenesis and centriole associated 1
SPP2 secreted phosphoprotein 2, 24kDa
SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6
ST7-OT3 ST7 overlapping transcript 3
SYNJ2BP synaptojanin 2 binding protein
SYNM synemin, intermediate filament protein
TAAR6 trace amine associated receptor 6
TAF1C TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
TAS2R13 taste receptor, type 2, member 13
TAS2R19 taste receptor, type 2, member 19
TAS2R46 taste receptor, type 2, member 46
TBC1D3F TBC1 domain family, member 3F
TCP10L2 t-complex 10-like 2
TDRD10 tudor domain containing 10
TEX33 testis expressed 33
TEX38 testis expressed 38
TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)
TFDP3 transcription factor Dp family, member 3
TJP2 tight junction protein 2
TKTL2 transketolase-like 2
TMC1 transmembrane channel-like 1
TNF tumor necrosis factor
TNFRSF13C tumor necrosis factor receptor superfamily, member 13C
TNFSF18 tumor necrosis factor (ligand) superfamily, member 18
TPRX1 tetra-peptide repeat homeobox 1
TRIM50 tripartite motif containing 50
TRIM60 tripartite motif containing 60
TRIM74 tripartite motif containing 74
TRPC2 transient receptor potential cation channel, subfamily C, member 2, pseudogene
TSGA13 testis specific, 13
TTC24 tetratricopeptide repeat domain 24
TTLL8 tubulin tyrosine ligase-like family member 8
TTTY10 testis-specific transcript, Y-linked 10 (non-protein coding)
ULK4P3 ULK4 pseudogene 3
UPK3B uroplakin 3B
USF2 upstream transcription factor 2, c-fos interacting
USP35 ubiquitin specific peptidase 35
VGLL1 vestigial-like family member 1
VN1R4 vomeronasal 1 receptor 4
WFDC13 WAP four-disulfide core domain 13
XAGE3 X antigen family, member 3
ZAN zonadhesin (gene/pseudogene)
ZC2HC1B zinc finger, C2HC-type containing 1B
ZCCHC18 zinc finger, CCHC domain containing 18
ZMYND15 zinc finger, MYND-type containing 15
ZNF296 zinc finger protein 296

low expression

Symbol Name
COPS8 COP9 signalosome subunit 8
EIF4E2 eukaryotic translation initiation factor 4E family member 2
NCL nucleolin
PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
PSPC1 paraspeckle component 1
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa