Brain Lower Grade Glioma_LGG_TCGA-TM-A7C5-01A-11R-A32Q-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

403 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-TM-A7C5-01A-11R-A32Q-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AARSD1 alanyl-tRNA synthetase domain containing 1
ACO1 aconitase 1, soluble
ACTL6B actin-like 6B
ACTRT1 actin-related protein T1
ADAMTSL1 ADAMTS-like 1
ADCK1 aarF domain containing kinase 1
AFAP1L2 actin filament associated protein 1-like 2
AGPS alkylglycerone phosphate synthase
ANO4 anoctamin 4
AP2B1 adaptor-related protein complex 2, beta 1 subunit
AP3B1 adaptor-related protein complex 3, beta 1 subunit
APOLD1 apolipoprotein L domain containing 1
APPL1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
APTX aprataxin
ARID3C AT rich interactive domain 3C (BRIGHT-like)
ARL4A ADP-ribosylation factor-like 4A
ASB17 ankyrin repeat and SOCS box containing 17
ATAT1 alpha tubulin acetyltransferase 1
ATCAY ataxia, cerebellar, Cayman type
ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
ATP5G2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)
ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)
BLMH bleomycin hydrolase
BPHL biphenyl hydrolase-like (serine hydrolase)
BPIFB2 BPI fold containing family B, member 2
BRAP BRCA1 associated protein
BTF3 basic transcription factor 3
BTF3P11 basic transcription factor 3 pseudogene 11
BZW2 basic leucine zipper and W2 domains 2
C11ORF16 chromosome 11 open reading frame 16
C2ORF80 chromosome 2 open reading frame 80
C2ORF83 chromosome 2 open reading frame 83
C6ORF48 chromosome 6 open reading frame 48
C9ORF41 chromosome 9 open reading frame 41
C9ORF85 chromosome 9 open reading frame 85
CA10 carbonic anhydrase X
CACNG1 calcium channel, voltage-dependent, gamma subunit 1
CACNG4 calcium channel, voltage-dependent, gamma subunit 4
CAMLG calcium modulating ligand
CAPN11 calpain 11
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family)
CCDC185 coiled-coil domain containing 185
CCND1 cyclin D1
CCND3 cyclin D3
CCSER2 coiled-coil serine-rich protein 2
CDH24 cadherin 24, type 2
CECR6 cat eye syndrome chromosome region, candidate 6
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3
CEP57 centrosomal protein 57kDa
CEP72 centrosomal protein 72kDa
CGREF1 cell growth regulator with EF-hand domain 1
CHGB chromogranin B
CHURC1 churchill domain containing 1
CIRH1A cirrhosis, autosomal recessive 1A (cirhin)
CIZ1 CDKN1A interacting zinc finger protein 1
CLUHP3 clustered mitochondria (cluA/CLU1) homolog pseudogene 3
COX10 COX10 heme A:farnesyltransferase cytochrome c oxidase assembly factor
CRTAC1 cartilage acidic protein 1
CS citrate synthase
CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
CXADRP2 coxsackie virus and adenovirus receptor pseudogene 2
CYFIP2 cytoplasmic FMR1 interacting protein 2
DBR1 debranching RNA lariats 1
DCTN4 dynactin 4 (p62)
DCX doublecortin
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1
DEFB131 defensin, beta 131
DISC1 disrupted in schizophrenia 1
DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding)
DNAJB5 DnaJ (Hsp40) homolog, subfamily B, member 5
DNER delta/notch-like EGF repeat containing
DOK4 docking protein 4
DROSHA drosha, ribonuclease type III
DRP2 dystrophin related protein 2
DTD1 D-tyrosyl-tRNA deacylase 1
DTD2 D-tyrosyl-tRNA deacylase 2 (putative)
EBPL emopamil binding protein-like
EDA2R ectodysplasin A2 receptor
EEF1B2 eukaryotic translation elongation factor 1 beta 2
EEF1E1 eukaryotic translation elongation factor 1 epsilon 1
EEF2 eukaryotic translation elongation factor 2
EIF3F eukaryotic translation initiation factor 3, subunit F
EIF3L eukaryotic translation initiation factor 3, subunit L
EIF4B eukaryotic translation initiation factor 4B
ELP3 elongator acetyltransferase complex subunit 3
EPB41L4A-AS1 EPB41L4A antisense RNA 1
EPN2 epsin 2
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1
ETV5 ets variant 5
FAM13C family with sequence similarity 13, member C
FAM155B family with sequence similarity 155, member B
FAM169B family with sequence similarity 169, member B
FAM19A2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2
FAM221B family with sequence similarity 221, member B
FAM224B family with sequence similarity 224, member B (non-protein coding)
FBXO10 F-box protein 10
FLJ34503 uncharacterized FLJ34503
FRA10AC1 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1
FRMPD1 FERM and PDZ domain containing 1
GABRA3 gamma-aminobutyric acid (GABA) A receptor, alpha 3
GDAP1L1 ganglioside induced differentiation associated protein 1-like 1
GFRA1 GDNF family receptor alpha 1
GK5 glycerol kinase 5 (putative)
GLDC glycine dehydrogenase (decarboxylating)
GMDS GDP-mannose 4,6-dehydratase
GNG2 guanine nucleotide binding protein (G protein), gamma 2
GNG4 guanine nucleotide binding protein (G protein), gamma 4
GPATCH2 G patch domain containing 2
GPHN gephyrin
GPR179 G protein-coupled receptor 179
GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A
GSPT2 G1 to S phase transition 2
GSX1 GS homeobox 1
GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa
GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa
HACL1 2-hydroxyacyl-CoA lyase 1
HAPLN1 hyaluronan and proteoglycan link protein 1
HDAC9 histone deacetylase 9
HIST1H4F histone cluster 1, H4f
HIST1H4K histone cluster 1, H4k
HMP19 HMP19 protein
HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3
HNRNPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1
HRNR hornerin
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1
HSP90AB2P heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene
IBTK inhibitor of Bruton agammaglobulinemia tyrosine kinase
IFITM4P interferon induced transmembrane protein 4 pseudogene
IGBP1 immunoglobulin (CD79A) binding protein 1
IGFBP1 insulin-like growth factor binding protein 1
IMPDH2 IMP (inosine 5'-monophosphate) dehydrogenase 2
INA internexin neuronal intermediate filament protein, alpha
ISOC1 isochorismatase domain containing 1
KANK3 KN motif and ankyrin repeat domains 3
KAT7 K(lysine) acetyltransferase 7
KCNAB1 potassium channel, voltage gated subfamily A regulatory beta subunit 1
KCNIP2 Kv channel interacting protein 2
KCNK10 potassium channel, two pore domain subfamily K, member 10
KCNK3 potassium channel, two pore domain subfamily K, member 3
KDM1B lysine (K)-specific demethylase 1B
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3
KIAA0141 KIAA0141
KIF13A kinesin family member 13A
KIF26B kinesin family member 26B
KLHL20 kelch-like family member 20
KLLN killin, p53-regulated DNA replication inhibitor
KLRC2 killer cell lectin-like receptor subfamily C, member 2
KTN1-AS1 KTN1 antisense RNA 1
LEPROTL1 leptin receptor overlapping transcript-like 1
LETMD1 LETM1 domain containing 1
LHFPL3 lipoma HMGIC fusion partner-like 3
LNX2 ligand of numb-protein X 2
LOC100130331 POTE ankyrin domain family, member F pseudogene
LOR loricrin
LPPR1 lipid phosphate phosphatase-related protein type 1
LRRC16B leucine rich repeat containing 16B
LRRC37A4P leucine rich repeat containing 37, member A4, pseudogene
LRRC75A-AS1 LRRC75A antisense RNA 1
LRRN1 leucine rich repeat neuronal 1
LRRTM4 leucine rich repeat transmembrane neuronal 4
MAP2 microtubule-associated protein 2
MARCH4 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase
MARCKS myristoylated alanine-rich protein kinase C substrate
MBD3L5 methyl-CpG binding domain protein 3-like 5
MCU mitochondrial calcium uniporter
METTL10 methyltransferase like 10
MFF mitochondrial fission factor
MICU1 mitochondrial calcium uptake 1
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
MMD2 monocyte to macrophage differentiation-associated 2
MPHOSPH6 M-phase phosphoprotein 6
MRPL3 mitochondrial ribosomal protein L3
MRPL30 mitochondrial ribosomal protein L30
MRPL45 mitochondrial ribosomal protein L45
MTHFD1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase
MTMR1 myotubularin related protein 1
MYH6 myosin, heavy chain 6, cardiac muscle, alpha
MYH7 myosin, heavy chain 7, cardiac muscle, beta
MYOZ1 myozenin 1
NACA nascent polypeptide-associated complex alpha subunit
NAP1L1 nucleosome assembly protein 1-like 1
NCL nucleolin
NEIL2 nei endonuclease VIII-like 2 (E. coli)
NGDN neuroguidin, EIF4E binding protein
NIF3L1 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)
NLE1 notchless homolog 1 (Drosophila)
NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
NONO non-POU domain containing, octamer-binding
NOP58 NOP58 ribonucleoprotein
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NSA2 NSA2 ribosome biogenesis homolog (S. cerevisiae)
NSMAF neutral sphingomyelinase (N-SMase) activation associated factor
NUDT10 nudix (nucleoside diphosphate linked moiety X)-type motif 10
NUDT17 nudix (nucleoside diphosphate linked moiety X)-type motif 17
NUDT9P1 nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene 1
NUFIP1 nuclear fragile X mental retardation protein interacting protein 1
NUP35 nucleoporin 35kDa
OR1L6 olfactory receptor, family 1, subfamily L, member 6
OR1Q1 olfactory receptor, family 1, subfamily Q, member 1
OR2L13 olfactory receptor, family 2, subfamily L, member 13
OR2L1P olfactory receptor, family 2, subfamily L, member 1 pseudogene
OR2L2 olfactory receptor, family 2, subfamily L, member 2
OR2L8 olfactory receptor, family 2, subfamily L, member 8 (gene/pseudogene)
OR51B4 olfactory receptor, family 51, subfamily B, member 4
OR52I1 olfactory receptor, family 52, subfamily I, member 1
OR8D4 olfactory receptor, family 8, subfamily D, member 4
OSBPL8 oxysterol binding protein-like 8
P2RX5 purinergic receptor P2X, ligand gated ion channel, 5
P2RX6 purinergic receptor P2X, ligand gated ion channel, 6
PAGE2 P antigen family, member 2 (prostate associated)
PANK1 pantothenate kinase 1
PAX1 paired box 1
PCDHA1 protocadherin alpha 1
PCDHA6 protocadherin alpha 6
PCDHB17P protocadherin beta 17 pseudogene
PCDHB3 protocadherin beta 3
PCDHGA9 protocadherin gamma subfamily A, 9
PCDHGB1 protocadherin gamma subfamily B, 1
PECR peroxisomal trans-2-enoyl-CoA reductase
PFAS phosphoribosylformylglycinamidine synthase
PID1 phosphotyrosine interaction domain containing 1
PIPSL PIP5K1A and PSMD4-like, pseudogene
PKNOX2 PBX/knotted 1 homeobox 2
PM20D2 peptidase M20 domain containing 2
PODN podocan
PODXL2 podocalyxin-like 2
POGLUT1 protein O-glucosyltransferase 1
POLR1E polymerase (RNA) I polypeptide E, 53kDa
POLR2F polymerase (RNA) II (DNA directed) polypeptide F
POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
POMK protein-O-mannose kinase
POTEB POTE ankyrin domain family, member B
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta
PPFIBP2 PTPRF interacting protein, binding protein 2 (liprin beta 2)
PPP1R12A protein phosphatase 1, regulatory subunit 12A
PRICKLE1 prickle homolog 1 (Drosophila)
PRKY protein kinase, Y-linked, pseudogene
PRMT3 protein arginine methyltransferase 3
PRMT5 protein arginine methyltransferase 5
PRRC1 proline-rich coiled-coil 1
PTCD3 pentatricopeptide repeat domain 3
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1
PUS3 pseudouridylate synthase 3
PWP1 PWP1 homolog (S. cerevisiae)
QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
R3HDM2 R3H domain containing 2
RAB2A RAB2A, member RAS oncogene family
RAB3C RAB3C, member RAS oncogene family
RAD51D RAD51 paralog D
RALYL RALY RNA binding protein-like
RAP2A RAP2A, member of RAS oncogene family
RBBP7 retinoblastoma binding protein 7
RBM3 RNA binding motif (RNP1, RRM) protein 3
RCL1 RNA terminal phosphate cyclase-like 1
REC114 REC114 meiotic recombination protein
RFXAP regulatory factor X-associated protein
RIOK1 RIO kinase 1
RIOK2 RIO kinase 2
RNF20 ring finger protein 20, E3 ubiquitin protein ligase
RNF217-AS1 RNF217 antisense RNA 1 (head to head)
RPL29P2 ribosomal protein L29 pseudogene 2
RPP40 ribonuclease P/MRP 40kDa subunit
RPS23 ribosomal protein S23
RPS4Y1 ribosomal protein S4, Y-linked 1
RPS4Y2 ribosomal protein S4, Y-linked 2
RPS6 ribosomal protein S6
RRAGB Ras-related GTP binding B
RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
RSL1D1 ribosomal L1 domain containing 1
SAPCD2 suppressor APC domain containing 2
SCAMP1 secretory carrier membrane protein 1
SCARNA7 small Cajal body-specific RNA 7
SCARNA9 small Cajal body-specific RNA 9
SCARNA9L small Cajal body-specific RNA 9-like
SCRN3 secernin 3
SDPR serum deprivation response
SEC23B Sec23 homolog B (S. cerevisiae)
SEPT7P9 septin 7 pseudogene 9
SHC3 SHC (Src homology 2 domain containing) transforming protein 3
SIGMAR1 sigma non-opioid intracellular receptor 1
SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1
SLC25A15 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15
SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5
SLC25A6 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6
SLC35F1 solute carrier family 35, member F1
SLC35G1 solute carrier family 35, member G1
SLC39A6 solute carrier family 39 (zinc transporter), member 6
SLC8A3 solute carrier family 8 (sodium/calcium exchanger), member 3
SLC9A2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2
SLMO2 slowmo homolog 2 (Drosophila)
SMAD2 SMAD family member 2
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
SMN2 survival of motor neuron 2, centromeric
SNORA62 small nucleolar RNA, H/ACA box 62
SNX27 sorting nexin family member 27
SPACA4 sperm acrosome associated 4
SPAST spastin
SPATA7 spermatogenesis associated 7
SPDYC speedy/RINGO cell cycle regulator family member C
SPIN3 spindlin family, member 3
SPRYD4 SPRY domain containing 4
SRSF12 serine/arginine-rich splicing factor 12
STAMBPL1 STAM binding protein-like 1
STK10 serine/threonine kinase 10
STK32A serine/threonine kinase 32A
STMN2 stathmin 2
STX6 syntaxin 6
SUCLG1 succinate-CoA ligase, alpha subunit
SUPT20H suppressor of Ty 20 homolog (S. cerevisiae)
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae)
TANGO6 transport and golgi organization 6 homolog (Drosophila)
TAS2R1 taste receptor, type 2, member 1
TAS2R43 taste receptor, type 2, member 43
TBC1D21 TBC1 domain family, member 21
TCL1B T-cell leukemia/lymphoma 1B
TERF2 telomeric repeat binding factor 2
TFCP2 transcription factor CP2
TGFA transforming growth factor, alpha
THG1L tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
THOC3 THO complex 3
TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast)
TMEM161B transmembrane protein 161B
TMEM163 transmembrane protein 163
TMEM169 transmembrane protein 169
TMEM257 transmembrane protein 257
TMEM35 transmembrane protein 35
TMEM38B transmembrane protein 38B
TMEM45B transmembrane protein 45B
TMSB4Y thymosin beta 4, Y-linked
TNNT1 troponin T type 1 (skeletal, slow)
TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast)
TOP1MT topoisomerase (DNA) I, mitochondrial
TPRX1 tetra-peptide repeat homeobox 1
TPTE2P1 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1
TRAF3 TNF receptor-associated factor 3
TRIM55 tripartite motif containing 55
TRIM67 tripartite motif containing 67
TRIM9 tripartite motif containing 9
TRMT61B tRNA methyltransferase 61B
TRPC1 transient receptor potential cation channel, subfamily C, member 1
TSEN2 TSEN2 tRNA splicing endonuclease subunit
TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding)
TTTY15 testis-specific transcript, Y-linked 15 (non-protein coding)
TTTY6B testis-specific transcript, Y-linked 6B (non-protein coding)
TXNL1 thioredoxin-like 1
UBQLN4 ubiquilin 4
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
UCK2 uridine-cytidine kinase 2
UMODL1-AS1 UMODL1 antisense RNA 1
UNC79 unc-79 homolog (C. elegans)
UNC80 unc-80 homolog (C. elegans)
UQCRC2 ubiquinol-cytochrome c reductase core protein II
USP25 ubiquitin specific peptidase 25
USP27X ubiquitin specific peptidase 27, X-linked
USP50 ubiquitin specific peptidase 50
UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast)
WDR12 WD repeat domain 12
WDR75 WD repeat domain 75
WDR89 WD repeat domain 89
WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1
XKR7 XK, Kell blood group complex subunit-related family, member 7
XYLB xylulokinase homolog (H. influenzae)
ZBTB12 zinc finger and BTB domain containing 12
ZC2HC1A zinc finger, C2HC-type containing 1A
ZC3H8 zinc finger CCCH-type containing 8
ZCCHC7 zinc finger, CCHC domain containing 7
ZDHHC22 zinc finger, DHHC-type containing 22
ZMAT2 zinc finger, matrin-type 2
ZMAT3 zinc finger, matrin-type 3
ZNF208 zinc finger protein 208
ZNF277 zinc finger protein 277
ZNF33B zinc finger protein 33B
ZNF485 zinc finger protein 485
ZNF512 zinc finger protein 512
ZNF563 zinc finger protein 563
ZNF57 zinc finger protein 57
ZNF589 zinc finger protein 589
ZNF681 zinc finger protein 681
ZXDB zinc finger, X-linked, duplicated B

low expression

Symbol Name
ADD1 adducin 1 (alpha)
COX18 COX18 cytochrome c oxidase assembly factor
CTBP1 C-terminal binding protein 1
ETFA electron-transfer-flavoprotein, alpha polypeptide
FAM193A family with sequence similarity 193, member A
FBXL5 F-box and leucine-rich repeat protein 5
GAK cyclin G associated kinase
GALT galactose-1-phosphate uridylyltransferase
HTT huntingtin
ILVBL ilvB (bacterial acetolactate synthase)-like
IVD isovaleryl-CoA dehydrogenase
MAEA macrophage erythroblast attacher
NDUFAF6 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
NOP14-AS1 NOP14 antisense RNA 1
RNF4 ring finger protein 4
STX18 syntaxin 18
TMEM128 transmembrane protein 128
TMEM33 transmembrane protein 33
UBE2D3 ubiquitin-conjugating enzyme E2D 3
ZFAND6 zinc finger, AN1-type domain 6
ZNF280D zinc finger protein 280D