Brain Lower Grade Glioma_LGG_TCGA-S9-A6WP-01A-12R-A34F-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

188 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-S9-A6WP-01A-12R-A34F-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6
AHRR aryl-hydrocarbon receptor repressor
APOC1 apolipoprotein C-I
APOF apolipoprotein F
ARHGAP27 Rho GTPase activating protein 27
BCAR4 breast cancer anti-estrogen resistance 4 (non-protein coding)
BRD9 bromodomain containing 9
C16ORF62 chromosome 16 open reading frame 62
C16ORF78 chromosome 16 open reading frame 78
C17ORF99 chromosome 17 open reading frame 99
C20ORF144 chromosome 20 open reading frame 144
C2ORF27B chromosome 2 open reading frame 27B
C9ORF106 chromosome 9 open reading frame 106
C9ORF156 chromosome 9 open reading frame 156
C9ORF57 chromosome 9 open reading frame 57
CCDC101 coiled-coil domain containing 101
CCDC127 coiled-coil domain containing 127
CDH15 cadherin 15, type 1, M-cadherin (myotubule)
CDHR1 cadherin-related family member 1
CEP170P1 centrosomal protein 170kDa pseudogene 1
CHGB chromogranin B
CIB3 calcium and integrin binding family member 3
CIB4 calcium and integrin binding family member 4
CLDN25 claudin 25
CLN6 ceroid-lipofuscinosis, neuronal 6, late infantile, variant
CLPTM1L CLPTM1-like
CRCT1 cysteine-rich C-terminal 1
CRLS1 cardiolipin synthase 1
CSPG4P2Y chondroitin sulfate proteoglycan 4 pseudogene 2, Y-linked
CYC1 cytochrome c-1
D2HGDH D-2-hydroxyglutarate dehydrogenase
DEFB109P1 defensin, beta 109, pseudogene 1
DEFB135 defensin, beta 135
DNASE2B deoxyribonuclease II beta
DPF2 D4, zinc and double PHD fingers family 2
DRD2 dopamine receptor D2
EHMT2 euchromatic histone-lysine N-methyltransferase 2
EXOC3 exocyst complex component 3
EXOC3-AS1 EXOC3 antisense RNA 1
F8A1 coagulation factor VIII-associated 1
FABP2 fatty acid binding protein 2, intestinal
FBXL6 F-box and leucine-rich repeat protein 6
FCMR Fc fragment of IgM receptor
FSD2 fibronectin type III and SPRY domain containing 2
GAD1 glutamate decarboxylase 1 (brain, 67kDa)
GLTPD2 glycolipid transfer protein domain containing 2
GPR148 G protein-coupled receptor 148
GUSBP4 glucuronidase, beta pseudogene 4
H2BFWT H2B histone family, member W, testis-specific
HAPLN1 hyaluronan and proteoglycan link protein 1
HGH1 HGH1 homolog (S. cerevisiae)
HGS hepatocyte growth factor-regulated tyrosine kinase substrate
HIST1H4D histone cluster 1, H4d
HIST1H4K histone cluster 1, H4k
HIST2H3C histone cluster 2, H3c
HIST3H2A histone cluster 3, H2a
HSF1 heat shock transcription factor 1
HULC hepatocellular carcinoma up-regulated long non-coding RNA
IL24 interleukin 24
INSL6 insulin-like 6
IVL involucrin
KANK3 KN motif and ankyrin repeat domains 3
KCNK16 potassium channel, two pore domain subfamily K, member 16
KLF1 Kruppel-like factor 1 (erythroid)
KRT14 keratin 14, type I
KRT16 keratin 16, type I
KRT36 keratin 36, type I
KRT6A keratin 6A, type II
KRT6B keratin 6B, type II
KRT6C keratin 6C, type II
LGALS7 lectin, galactoside-binding, soluble, 7
LINGO1 leucine rich repeat and Ig domain containing 1
LIPA lipase A, lysosomal acid, cholesterol esterase
LKAAEAR1 LKAAEAR motif containing 1
LOC100128239 uncharacterized LOC100128239
LOC100130264 uncharacterized LOC100130264
LOC283332 uncharacterized LOC283332
LOC284009 uncharacterized LOC284009
LOC653786 otoancorin pseudogene
LPAL2 lipoprotein, Lp(a)-like 2, pseudogene
LPPR1 lipid phosphate phosphatase-related protein type 1
LRRC16B leucine rich repeat containing 16B
LRRC24 leucine rich repeat containing 24
LRRC26 leucine rich repeat containing 26
LRRC39 leucine rich repeat containing 39
MARCH11 membrane-associated ring finger (C3HC4) 11
MORC2 MORC family CW-type zinc finger 2
MTSS1 metastasis suppressor 1
MTSS1L metastasis suppressor 1-like
MYH6 myosin, heavy chain 6, cardiac muscle, alpha
NAIF1 nuclear apoptosis inducing factor 1
NFU1 NFU1 iron-sulfur cluster scaffold
NHEG1 neuroblastoma highly expressed 1
NPY neuropeptide Y
NUDT17 nudix (nucleoside diphosphate linked moiety X)-type motif 17
NUTM1 NUT midline carcinoma, family member 1
NXF3 nuclear RNA export factor 3
ODF4 outer dense fiber of sperm tails 4
OLIG1 oligodendrocyte transcription factor 1
OR1G1 olfactory receptor, family 1, subfamily G, member 1
OR2L1P olfactory receptor, family 2, subfamily L, member 1 pseudogene
OR2L3 olfactory receptor, family 2, subfamily L, member 3
OR2T6 olfactory receptor, family 2, subfamily T, member 6
OR3A4P olfactory receptor, family 3, subfamily A, member 4 pseudogene
OR8A1 olfactory receptor, family 8, subfamily A, member 1
OTOA otoancorin
OTOP1 otopetrin 1
PCDHA3 protocadherin alpha 3
PCDHA9 protocadherin alpha 9
PCDHGB1 protocadherin gamma subfamily B, 1
PDCD6 programmed cell death 6
PDCD7 programmed cell death 7
PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2
PFN3 profilin 3
PGLYRP3 peptidoglycan recognition protein 3
PLA2G7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
PLAC1 placenta-specific 1
POGLUT1 protein O-glucosyltransferase 1
POU3F3 POU class 3 homeobox 3
PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B
PRKY protein kinase, Y-linked, pseudogene
PRR22 proline rich 22
PRR34 proline rich 34
PSMG4 proteasome (prosome, macropain) assembly chaperone 4
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1
REC114 REC114 meiotic recombination protein
RGAG4 retrotransposon gag domain containing 4
RIMBP3 RIMS binding protein 3
RIMBP3C RIMS binding protein 3C
RPS26 ribosomal protein S26
S1PR2 sphingosine-1-phosphate receptor 2
SCARNA4 small Cajal body-specific RNA 4
SCARNA8 small Cajal body-specific RNA 8
SCLY selenocysteine lyase
SCRT1 scratch family zinc finger 1
SCRT2 scratch family zinc finger 2
SDHAP3 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3
SFR1 SWI5-dependent recombination repair 1
SIGLEC12 sialic acid binding Ig-like lectin 12 (gene/pseudogene)
SLC1A6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
SLC26A1 solute carrier family 26 (anion exchanger), member 1
SMCR5 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)
SNHG20 small nucleolar RNA host gene 20
SNORA27 small nucleolar RNA, H/ACA box 27
SNORA36A small nucleolar RNA, H/ACA box 36A
SNORA51 small nucleolar RNA, H/ACA box 51
SNORA52 small nucleolar RNA, H/ACA box 52
SNORA56 small nucleolar RNA, H/ACA box 56
SNORA62 small nucleolar RNA, H/ACA box 62
SNORA72 small nucleolar RNA, H/ACA box 72
SNORD8 small nucleolar RNA, C/D box 8
SPZ1 spermatogenic leucine zipper 1
SRI sorcin
STARD8 StAR-related lipid transfer (START) domain containing 8
STX6 syntaxin 6
TAS2R19 taste receptor, type 2, member 19
TAS2R31 taste receptor, type 2, member 31
TERF2 telomeric repeat binding factor 2
THEM6 thioesterase superfamily member 6
TIGD5 tigger transposable element derived 5
TM6SF2 transmembrane 6 superfamily member 2
TMEM88B transmembrane protein 88B
TOP1MT topoisomerase (DNA) I, mitochondrial
TPGS1 tubulin polyglutamylase complex subunit 1
TRAPPC9 trafficking protein particle complex 9
TSNARE1 t-SNARE domain containing 1
TSPAN8 tetraspanin 8
TTC38 tetratricopeptide repeat domain 38
TTLL12 tubulin tyrosine ligase-like family member 12
TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding)
TYSND1 trypsin domain containing 1
UFSP1 UFM1-specific peptidase 1 (non-functional)
WBP2NL WBP2 N-terminal like
ZC3H3 zinc finger CCCH-type containing 3
ZFP41 ZFP41 zinc finger protein
ZNF252P-AS1 ZNF252P antisense RNA 1
ZNF414 zinc finger protein 414
ZNF517 zinc finger protein 517
ZNF696 zinc finger protein 696

low expression

Symbol Name
COPS4 COP9 signalosome subunit 4
EIF4E eukaryotic translation initiation factor 4E
HELQ helicase, POLQ-like
UBE2D3 ubiquitin-conjugating enzyme E2D 3
ZFYVE1 zinc finger, FYVE domain containing 1
ZNF439 zinc finger protein 439
ZNF630 zinc finger protein 630
ZSCAN12 zinc finger and SCAN domain containing 12