Brain Lower Grade Glioma_LGG_TCGA-S9-A6UB-01A-21R-A33Z-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

410 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-S9-A6UB-01A-21R-A33Z-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABHD16B abhydrolase domain containing 16B
ACACA acetyl-CoA carboxylase alpha
ACTL7B actin-like 7B
ACTN3 actinin, alpha 3 (gene/pseudogene)
ACTR5 ARP5 actin-related protein 5 homolog (yeast)
ADAM20 ADAM metallopeptidase domain 20
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
ALOX12B arachidonate 12-lipoxygenase, 12R type
AMER3 APC membrane recruitment protein 3
ANKRA2 ankyrin repeat, family A (RFXANK-like), 2
ANXA9 annexin A9
APC2 adenomatosis polyposis coli 2
APOA5 apolipoprotein A-V
ARL17A ADP-ribosylation factor-like 17A
ASAH2 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2
ASB14 ankyrin repeat and SOCS box containing 14
ASB16 ankyrin repeat and SOCS box containing 16
ASGR1 asialoglycoprotein receptor 1
ATAT1 alpha tubulin acetyltransferase 1
AVPR2 arginine vasopressin receptor 2
AWAT1 acyl-CoA wax alcohol acyltransferase 1
BMS1P5 BMS1 ribosome biogenesis factor pseudogene 5
BPI bactericidal/permeability-increasing protein
BPTF bromodomain PHD finger transcription factor
BRD2 bromodomain containing 2
BRD8 bromodomain containing 8
C12ORF43 chromosome 12 open reading frame 43
C17ORF102 chromosome 17 open reading frame 102
C17ORF82 chromosome 17 open reading frame 82
C17ORF98 chromosome 17 open reading frame 98
C1ORF185 chromosome 1 open reading frame 185
C1ORF220 chromosome 1 open reading frame 220
C4ORF51 chromosome 4 open reading frame 51
C8ORF86 chromosome 8 open reading frame 86
C9ORF139 chromosome 9 open reading frame 139
C9ORF156 chromosome 9 open reading frame 156
C9ORF173 chromosome 9 open reading frame 173
C9ORF85 chromosome 9 open reading frame 85
CAPN11 calpain 11
CATSPER2P1 cation channel, sperm associated 2 pseudogene 1
CATSPER3 cation channel, sperm associated 3
CCDC116 coiled-coil domain containing 116
CCDC185 coiled-coil domain containing 185
CCDC38 coiled-coil domain containing 38
CCDC78 coiled-coil domain containing 78
CDHR1 cadherin-related family member 1
CDKL1 cyclin-dependent kinase-like 1 (CDC2-related kinase)
CDON cell adhesion associated, oncogene regulated
CDRT1 CMT1A duplicated region transcript 1
CDX4 caudal type homeobox 4
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3
CHERP calcium homeostasis endoplasmic reticulum protein
CHGB chromogranin B
CLUHP3 clustered mitochondria (cluA/CLU1) homolog pseudogene 3
CMTR1 cap methyltransferase 1
CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3
CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4
CNTN6 contactin 6
COG6 component of oligomeric golgi complex 6
COG8 component of oligomeric golgi complex 8
COL17A1 collagen, type XVII, alpha 1
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen)
COL4A4 collagen, type IV, alpha 4
COX15 cytochrome c oxidase assembly homolog 15 (yeast)
COX7B2 cytochrome c oxidase subunit VIIb2
CPO carboxypeptidase O
CRCT1 cysteine-rich C-terminal 1
CREB3L4 cAMP responsive element binding protein 3-like 4
CREBBP CREB binding protein
CRYM-AS1 CRYM antisense RNA 1
CSRP2BP CSRP2 binding protein
CTTNBP2 cortactin binding protein 2
CXORF56 chromosome X open reading frame 56
CYB5D2 cytochrome b5 domain containing 2
CYP17A1 cytochrome P450, family 17, subfamily A, polypeptide 1
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1
CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1
CYP2A6 cytochrome P450, family 2, subfamily A, polypeptide 6
DAND5 DAN domain family member 5, BMP antagonist
DBF4B DBF4 zinc finger B
DBR1 debranching RNA lariats 1
DCTN4 dynactin 4 (p62)
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase)
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
DDX31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
DDX51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
DET1 de-etiolated homolog 1 (Arabidopsis)
DNAH1 dynein, axonemal, heavy chain 1
DROSHA drosha, ribonuclease type III
DVL2 dishevelled segment polarity protein 2
DYNAP dynactin associated protein
EARS2 glutamyl-tRNA synthetase 2, mitochondrial
EBPL emopamil binding protein-like
EDC3 enhancer of mRNA decapping 3
EFNA2 ephrin-A2
EFS embryonal Fyn-associated substrate
ELMSAN1 ELM2 and Myb/SANT-like domain containing 1
EPB41L4A-AS1 EPB41L4A antisense RNA 1
EPC2 enhancer of polycomb homolog 2 (Drosophila)
EPX eosinophil peroxidase
ERCC3 excision repair cross-complementation group 3
ETV5 ets variant 5
EXOSC2 exosome component 2
EXOSC6 exosome component 6
FAM117B family with sequence similarity 117, member B
FAM129C family with sequence similarity 129, member C
FAM155A family with sequence similarity 155, member A
FAM186B family with sequence similarity 186, member B
FAM209B family with sequence similarity 209, member B
FAM221B family with sequence similarity 221, member B
FAM63A family with sequence similarity 63, member A
FAM66C family with sequence similarity 66, member C
FASN fatty acid synthase
FBXL19-AS1 FBXL19 antisense RNA 1 (head to head)
FBXO38 F-box protein 38
FCRLB Fc receptor-like B
FEM1A fem-1 homolog a (C. elegans)
FLG filaggrin
FLJ45079 FLJ45079 protein
FNDC8 fibronectin type III domain containing 8
FOXD4 forkhead box D4
FOXD4L3 forkhead box D4-like 3
FOXD4L5 forkhead box D4-like 5
FTX FTX transcript, XIST regulator (non-protein coding)
GABPB2 GA binding protein transcription factor, beta subunit 2
GALR1 galanin receptor 1
GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
GDPGP1 GDP-D-glucose phosphorylase 1
GGN gametogenetin
GH1 growth hormone 1
GID8 GID complex subunit 8
GLDC glycine dehydrogenase (decarboxylating)
GLYCTK glycerate kinase
GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
GPR148 G protein-coupled receptor 148
GPR89B G protein-coupled receptor 89B
GRM6 glutamate receptor, metabotropic 6
GRXCR2 glutaredoxin, cysteine rich 2
GTF2H2B general transcription factor IIH, polypeptide 2B (pseudogene)
HCG27 HLA complex group 27 (non-protein coding)
HEY1 hes-related family bHLH transcription factor with YRPW motif 1
HKDC1 hexokinase domain containing 1
HLA-J major histocompatibility complex, class I, J (pseudogene)
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase
HPS4 Hermansky-Pudlak syndrome 4
HSF2BP heat shock transcription factor 2 binding protein
HSF4 heat shock transcription factor 4
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1
HSP90AB2P heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene
IFITM5 interferon induced transmembrane protein 5
IL25 interleukin 25
INSM2 insulinoma-associated 2
INTS7 integrator complex subunit 7
ITGB1BP2 integrin beta 1 binding protein (melusin) 2
KAT6B K(lysine) acetyltransferase 6B
KAT7 K(lysine) acetyltransferase 7
KBTBD6 kelch repeat and BTB (POZ) domain containing 6
KCNRG potassium channel regulator
KDM2B lysine (K)-specific demethylase 2B
KDM4B lysine (K)-specific demethylase 4B
KIAA0141 KIAA0141
KIAA1715 KIAA1715
KIAA1755 KIAA1755
KIF7 kinesin family member 7
KLC4 kinesin light chain 4
KLK9 kallikrein-related peptidase 9
KRT40 keratin 40, type I
KRTAP5-6 keratin associated protein 5-6
KRTAP5-7 keratin associated protein 5-7
LCMT2 leucine carboxyl methyltransferase 2
LETM2 leucine zipper-EF-hand containing transmembrane protein 2
LGTN ligatin
LHFPL4 lipoma HMGIC fusion partner-like 4
LINC00167 long intergenic non-protein coding RNA 167
LINC00176 long intergenic non-protein coding RNA 176
LINC00235 long intergenic non-protein coding RNA 235
LINC00518 long intergenic non-protein coding RNA 518
LINC01547 long intergenic non-protein coding RNA 1547
LKAAEAR1 LKAAEAR motif containing 1
LOC100130264 uncharacterized LOC100130264
LOC100272217 uncharacterized LOC100272217
LOC145837
LOC283332 uncharacterized LOC283332
LOC286359 uncharacterized LOC286359
LOC647859 occludin pseudogene
LOC728024 chromosome X open reading frame 56 pseudogene
LPAL2 lipoprotein, Lp(a)-like 2, pseudogene
LPCAT1 lysophosphatidylcholine acyltransferase 1
LPO lactoperoxidase
LPPR1 lipid phosphate phosphatase-related protein type 1
LRIT2 leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
LRRC14 leucine rich repeat containing 14
LRRC37A leucine rich repeat containing 37A
LRRC37A2 leucine rich repeat containing 37, member A2
LRRC37B leucine rich repeat containing 37B
LY6G5C lymphocyte antigen 6 complex, locus G5C
MAGEB3 melanoma antigen family B3
MAGEE2 melanoma antigen family E2
MAGEL2 melanoma antigen family L2
MARCH4 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase
MBD3L5 methyl-CpG binding domain protein 3-like 5
MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
MCM3AP-AS1 MCM3AP antisense RNA 1
METTL11B methyltransferase like 11B
MIA2 melanoma inhibitory activity 2
MLH3 mutL homolog 3
MMP24 matrix metallopeptidase 24 (membrane-inserted)
MN1 meningioma (disrupted in balanced translocation) 1
MOV10L1 Mov10 RISC complex RNA helicase like 1
MRGPRG-AS1 MRGPRG antisense RNA 1
MRPL45 mitochondrial ribosomal protein L45
MYH6 myosin, heavy chain 6, cardiac muscle, alpha
MYH7 myosin, heavy chain 7, cardiac muscle, beta
MYO16 myosin XVI
MYOZ1 myozenin 1
MYT1 myelin transcription factor 1
N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative)
NCOA5 nuclear receptor coactivator 5
NFX1 nuclear transcription factor, X-box binding 1
NHEJ1 nonhomologous end-joining factor 1
NLE1 notchless homolog 1 (Drosophila)
NMBR neuromedin B receptor
NOG noggin
NOTCH1 notch 1
NOXO1 NADPH oxidase organizer 1
NPB neuropeptide B
NR1H4 nuclear receptor subfamily 1, group H, member 4
NRG2 neuregulin 2
NSDHL NAD(P) dependent steroid dehydrogenase-like
NUTM1 NUT midline carcinoma, family member 1
OR1L6 olfactory receptor, family 1, subfamily L, member 6
OR1L8 olfactory receptor, family 1, subfamily L, member 8
OR1N2 olfactory receptor, family 1, subfamily N, member 2
OR52D1 olfactory receptor, family 52, subfamily D, member 1
PARP3 poly (ADP-ribose) polymerase family, member 3
PAX5 paired box 5
PCCB propionyl CoA carboxylase, beta polypeptide
PCDH1 protocadherin 1
PCDHA2 protocadherin alpha 2
PCDHA5 protocadherin alpha 5
PCDHGA10 protocadherin gamma subfamily A, 10
PCDHGA2 protocadherin gamma subfamily A, 2
PCDHGB6 protocadherin gamma subfamily B, 6
PCDHGB7 protocadherin gamma subfamily B, 7
PDZRN4 PDZ domain containing ring finger 4
PFAS phosphoribosylformylglycinamidine synthase
PGAP1 post-GPI attachment to proteins 1
PGLYRP4 peptidoglycan recognition protein 4
PIGO phosphatidylinositol glycan anchor biosynthesis, class O
PIGZ phosphatidylinositol glycan anchor biosynthesis, class Z
PLA2G2C phospholipase A2, group IIC
PM20D2 peptidase M20 domain containing 2
PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
POLL polymerase (DNA directed), lambda
POU3F3 POU class 3 homeobox 3
POU5F2 POU domain class 5, transcription factor 2
PROX2 prospero homeobox 2
PRPH peripherin
PRPSAP2 phosphoribosyl pyrophosphate synthetase-associated protein 2
PRR3 proline rich 3
PSMB11 proteasome (prosome, macropain) subunit, beta type, 11
PSMG4 proteasome (prosome, macropain) assembly chaperone 4
PSTPIP1 proline-serine-threonine phosphatase interacting protein 1
PTPN23 protein tyrosine phosphatase, non-receptor type 23
RBM19 RNA binding motif protein 19
RCCD1 RCC1 domain containing 1
RIMBP3C RIMS binding protein 3C
RIOK2 RIO kinase 2
RMND5B required for meiotic nuclear division 5 homolog B (S. cerevisiae)
RNF112 ring finger protein 112
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila)
RPAP1 RNA polymerase II associated protein 1
RPL21 ribosomal protein L21
RPS26 ribosomal protein S26
RPS4Y2 ribosomal protein S4, Y-linked 2
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5
RRN3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
RSRC2 arginine/serine-rich coiled-coil 2
RTP5 receptor (chemosensory) transporter protein 5 (putative)
RUFY4 RUN and FYVE domain containing 4
RXRB retinoid X receptor, beta
SARM1 sterile alpha and TIR motif containing 1
SART3 squamous cell carcinoma antigen recognized by T cells 3
SCGB3A1 secretoglobin, family 3A, member 1
SETDB1 SET domain, bifurcated 1
SEZ6L seizure related 6 homolog (mouse)-like
SEZ6L2 seizure related 6 homolog (mouse)-like 2
SF1 splicing factor 1
SH3BP5L SH3-binding domain protein 5-like
SKOR1 SKI family transcriptional corepressor 1
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8
SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2
SLC25A21 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21
SLC35A1 solute carrier family 35 (CMP-sialic acid transporter), member A1
SLC46A1 solute carrier family 46 (folate transporter), member 1
SLC7A5P1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1
SLC8A3 solute carrier family 8 (sodium/calcium exchanger), member 3
SLC9B1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
SLX4 SLX4 structure-specific endonuclease subunit
SMIM21 small integral membrane protein 21
SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)
SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1
SNORA27 small nucleolar RNA, H/ACA box 27
SNORA32 small nucleolar RNA, H/ACA box 32
SNORA40 small nucleolar RNA, H/ACA box 40
SNORD89 small nucleolar RNA, C/D box 89
SP7 Sp7 transcription factor
SPATA32 spermatogenesis associated 32
SPATA7 spermatogenesis associated 7
SPIN2B spindlin family, member 2B
SPRYD4 SPRY domain containing 4
SQLE squalene epoxidase
SSX4 synovial sarcoma, X breakpoint 4
SUB1 SUB1 homolog (S. cerevisiae)
SURF6 surfeit 6
SUSD1 sushi domain containing 1
SYCE1 synaptonemal complex central element protein 1
SYCE3 synaptonemal complex central element protein 3
SYNRG synergin, gamma
SYT17 synaptotagmin XVII
TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
TAL2 T-cell acute lymphocytic leukemia 2
TAS2R9 taste receptor, type 2, member 9
TBC1D3P1-DHX40P1 TBC1D3P1-DHX40P1 readthrough transcribed pseudogene
TBX6 T-box 6
TCP10 t-complex 10
TECTA tectorin alpha
TEDDM1 transmembrane epididymal protein 1
TFCP2 transcription factor CP2
THTPA thiamine triphosphatase
TIRAP toll-interleukin 1 receptor (TIR) domain containing adaptor protein
TLE6 transducin-like enhancer of split 6
TLX1NB TLX1 neighbor
TMA16 translation machinery associated 16 homolog (S. cerevisiae)
TMED7-TICAM2 TMED7-TICAM2 readthrough
TMEM151B transmembrane protein 151B
TMEM181 transmembrane protein 181
TMEM196 transmembrane protein 196
TMEM30C transmembrane protein 30C
TMIGD1 transmembrane and immunoglobulin domain containing 1
TMSB4Y thymosin beta 4, Y-linked
TNPO2 transportin 2
TPPP2 tubulin polymerization-promoting protein family member 2
TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2
TRIM64 tripartite motif containing 64
TRMT10B tRNA methyltransferase 10 homolog B (S. cerevisiae)
TRPC3 transient receptor potential cation channel, subfamily C, member 3
TSNAX-DISC1 TSNAX-DISC1 readthrough (NMD candidate)
TSPY26P testis specific protein, Y-linked 26, pseudogene
TTTY13 testis-specific transcript, Y-linked 13 (non-protein coding)
TTTY8 testis-specific transcript, Y-linked 8 (non-protein coding)
TYSND1 trypsin domain containing 1
UBTF upstream binding transcription factor, RNA polymerase I
UCKL1-AS1 UCKL1 antisense RNA 1
UFSP1 UFM1-specific peptidase 1 (non-functional)
UNKL unkempt family zinc finger-like
USP17L6P ubiquitin specific peptidase 17-like family member 6, pseudogene
USP51 ubiquitin specific peptidase 51
UTP14C UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
WDR86 WD repeat domain 86
WNT3 wingless-type MMTV integration site family, member 3
WSCD1 WSC domain containing 1
XKR6 XK, Kell blood group complex subunit-related family, member 6
XKR7 XK, Kell blood group complex subunit-related family, member 7
ZACN zinc activated ligand-gated ion channel
ZBTB25 zinc finger and BTB domain containing 25
ZBTB3 zinc finger and BTB domain containing 3
ZBTB32 zinc finger and BTB domain containing 32
ZBTB8B zinc finger and BTB domain containing 8B
ZCCHC14 zinc finger, CCHC domain containing 14
ZDHHC22 zinc finger, DHHC-type containing 22
ZFP41 ZFP41 zinc finger protein
ZFPM2 zinc finger protein, FOG family member 2
ZNF100 zinc finger protein 100
ZNF14 zinc finger protein 14
ZNF219 zinc finger protein 219
ZNF268 zinc finger protein 268
ZNF319 zinc finger protein 319
ZNF33B zinc finger protein 33B
ZNF414 zinc finger protein 414
ZNF425 zinc finger protein 425
ZNF429 zinc finger protein 429
ZNF519 zinc finger protein 519
ZNF534 zinc finger protein 534
ZNF626 zinc finger protein 626
ZNF658 zinc finger protein 658
ZNF674 zinc finger protein 674
ZNF714 zinc finger protein 714
ZNF717 zinc finger protein 717
ZNF737 zinc finger protein 737
ZNF740 zinc finger protein 740
ZNF785 zinc finger protein 785
ZNF839 zinc finger protein 839
ZNF843 zinc finger protein 843
ZNF85 zinc finger protein 85
ZNRF4 zinc and ring finger 4
ZSWIM3 zinc finger, SWIM-type containing 3
ZSWIM4 zinc finger, SWIM-type containing 4

low expression

Symbol Name
FAM200B family with sequence similarity 200, member B
FAM204A family with sequence similarity 204, member A
FBXL5 F-box and leucine-rich repeat protein 5
GAK cyclin G associated kinase
GRPEL1 GrpE-like 1, mitochondrial (E. coli)
PACRGL PARK2 co-regulated-like
PEBP1 phosphatidylethanolamine binding protein 1
RNF4 ring finger protein 4
SLC30A9 solute carrier family 30 (zinc transporter), member 9
SLC37A4 solute carrier family 37 (glucose-6-phosphate transporter), member 4
UBLCP1 ubiquitin-like domain containing CTD phosphatase 1