Brain Lower Grade Glioma_LGG_TCGA-P5-A780-01A-12R-A32Q-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

306 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-P5-A780-01A-12R-A32Q-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AADACL3 arylacetamide deacetylase-like 3
ACTL7A actin-like 7A
ACTL7B actin-like 7B
ADAM10 ADAM metallopeptidase domain 10
ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20
ADCY6 adenylate cyclase 6
AKAP13 A kinase (PRKA) anchor protein 13
AKR1B10 aldo-keto reductase family 1, member B10 (aldose reductase)
AKR1B15 aldo-keto reductase family 1, member B15
ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2
ALPK2 alpha-kinase 2
AMY2A amylase, alpha 2A (pancreatic)
ANGPTL3 angiopoietin-like 3
ANKRD10 ankyrin repeat domain 10
ANKRD16 ankyrin repeat domain 16
ANKRD26 ankyrin repeat domain 26
ANKRD36B ankyrin repeat domain 36B
ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
ANP32A-IT1 ANP32A intronic transcript 1
ANP32D acidic (leucine-rich) nuclear phosphoprotein 32 family, member D
ANTXRL anthrax toxin receptor-like
APH1B APH1B gamma secretase subunit
ARMCX3 armadillo repeat containing, X-linked 3
ATP1A1-AS1 ATP1A1 antisense RNA 1
ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
BAHD1 bromo adjacent homology domain containing 1
BAMBI BMP and activin membrane-bound inhibitor
BARX2 BARX homeobox 2
BAZ1A bromodomain adjacent to zinc finger domain, 1A
BEND7 BEN domain containing 7
BIVM basic, immunoglobulin-like variable motif containing
BTBD1 BTB (POZ) domain containing 1
C2ORF83 chromosome 2 open reading frame 83
C4ORF51 chromosome 4 open reading frame 51
CATSPER4 cation channel, sperm associated 4
CCBL2 cysteine conjugate-beta lyase 2
CCDC178 coiled-coil domain containing 178
CCDC7 coiled-coil domain containing 7
CCL3 chemokine (C-C motif) ligand 3
CCL4 chemokine (C-C motif) ligand 4
CCNY cyclin Y
CDC123 cell division cycle 123
CDC42SE1 CDC42 small effector 1
CDH15 cadherin 15, type 1, M-cadherin (myotubule)
CEACAM20 carcinoembryonic antigen-related cell adhesion molecule 20
CELF2 CUGBP, Elav-like family member 2
CEP83 centrosomal protein 83kDa
CEPT1 choline/ethanolamine phosphotransferase 1
CH25H cholesterol 25-hydroxylase
CHD2 chromodomain helicase DNA binding protein 2
CHRNG cholinergic receptor, nicotinic, gamma (muscle)
CLCA2 chloride channel accessory 2
CLDN25 claudin 25
CLEC2D C-type lectin domain family 2, member D
CLK3 CDC-like kinase 3
CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit
CLRN2 clarin 2
CNBD1 cyclic nucleotide binding domain containing 1
CNTN3 contactin 3 (plasmacytoma associated)
COL11A1 collagen, type XI, alpha 1
COL20A1 collagen, type XX, alpha 1
CORT cortistatin
COX8C cytochrome c oxidase subunit VIIIC
CRTC3 CREB regulated transcription coactivator 3
CSN2 casein beta
CUL2 cullin 2
CX3CL1 chemokine (C-X3-C motif) ligand 1
CXORF36 chromosome X open reading frame 36
CYP27C1 cytochrome P450, family 27, subfamily C, polypeptide 1
DBF4B DBF4 zinc finger B
DCAF8L1 DDB1 and CUL4 associated factor 8-like 1
DCLRE1C DNA cross-link repair 1C
DDX55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
DEFB109P1 defensin, beta 109, pseudogene 1
DEPDC7 DEP domain containing 7
DHTKD1 dehydrogenase E1 and transketolase domain containing 1
DIP2C DIP2 disco-interacting protein 2 homolog C (Drosophila)
EDC3 enhancer of mRNA decapping 3
EDNRA endothelin receptor type A
EEF1B2 eukaryotic translation elongation factor 1 beta 2
EFCAB5 EF-hand calcium binding domain 5
EFTUD1 elongation factor Tu GTP binding domain containing 1
EFTUD2 elongation factor Tu GTP binding domain containing 2
ELOVL7 ELOVL fatty acid elongase 7
EML3 echinoderm microtubule associated protein like 3
EXOSC10 exosome component 10
EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit
FABP4 fatty acid binding protein 4, adipocyte
FABP9 fatty acid binding protein 9, testis
FAM177A1 family with sequence similarity 177, member A1
FAM180A family with sequence similarity 180, member A
FAM188A family with sequence similarity 188, member A
FAM219B family with sequence similarity 219, member B
FAR1 fatty acyl CoA reductase 1
FBL fibrillarin
FBXO18 F-box protein, helicase, 18
FCAR Fc fragment of IgA receptor
FOXL2NB FOXL2 neighbor
FRK fyn-related Src family tyrosine kinase
GDI2 GDP dissociation inhibitor 2
GFRAL GDNF family receptor alpha like
GJB4 gap junction protein, beta 4, 30.3kDa
GOLGA6L5P golgin A6 family-like 5, pseudogene
GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1
GTPBP4 GTP binding protein 4
HDGFRP3 hepatoma-derived growth factor, related protein 3
HERC2P2 hect domain and RLD 2 pseudogene 2
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
HIP1 huntingtin interacting protein 1
HIST1H2BE histone cluster 1, H2be
HLX H2.0-like homeobox
HM13 histocompatibility (minor) 13
HMG20A high mobility group 20A
HRC histidine rich calcium binding protein
HSD17B7P2 hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2
HSPA14 heat shock 70kDa protein 14
HYAL4 hyaluronoglucosaminidase 4
ICE2 interactor of little elongation complex ELL subunit 2
IFITM1 interferon induced transmembrane protein 1
IL1B interleukin 1, beta
ING5 inhibitor of growth family, member 5
IREB2 iron-responsive element binding protein 2
JARID2 jumonji, AT rich interactive domain 2
KIF25 kinesin family member 25
KIF5B kinesin family member 5B
KIN Kin17 DNA and RNA binding protein
KLF13 Kruppel-like factor 13
KLHL41 kelch-like family member 41
KLK9 kallikrein-related peptidase 9
KRTAP13-1 keratin associated protein 13-1
LACC1 laccase (multicopper oxidoreductase) domain containing 1
LARP4B La ribonucleoprotein domain family, member 4B
LCORL ligand dependent nuclear receptor corepressor-like
LINC00320 long intergenic non-protein coding RNA 320
LINC00341 long intergenic non-protein coding RNA 341
LINC00593 long intergenic non-protein coding RNA 593
LINC00597 long intergenic non-protein coding RNA 597
LOC100130264 uncharacterized LOC100130264
LOC100271832 uncharacterized LOC100271832
LOC286094
LOC643486
LOC646471 uncharacterized LOC646471
MAGEB6 melanoma antigen family B6
MAGEC3 melanoma antigen family C3
MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
MAN2C1 mannosidase, alpha, class 2C, member 1
MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5
MED28 mediator complex subunit 28
MIR17HG miR-17-92 cluster host gene
MLLT10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
MORF4L1 mortality factor 4 like 1
MTMR9LP myotubularin related protein 9-like, pseudogene
MTPAP mitochondrial poly(A) polymerase
MYEF2 myelin expression factor 2
MYSM1 Myb-like, SWIRM and MPN domains 1
N4BP2L2-IT2 N4BPL2 intronic transcript 2
NAP1L1 nucleosome assembly protein 1-like 1
NBPF7 neuroblastoma breakpoint family, member 7
NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding)
NEK3 NIMA-related kinase 3
NEU4 sialidase 4
NFKBID nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta
NLRP5 NLR family, pyrin domain containing 5
NPY neuropeptide Y
NSUN6 NOP2/Sun domain family, member 6
NTN4 netrin 4
NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4
OPN1LW opsin 1 (cone pigments), long-wave-sensitive
OR10A7 olfactory receptor, family 10, subfamily A, member 7
OR10G2 olfactory receptor, family 10, subfamily G, member 2
OR10H3 olfactory receptor, family 10, subfamily H, member 3
OR10J5 olfactory receptor, family 10, subfamily J, member 5
OR13C3 olfactory receptor, family 13, subfamily C, member 3
OR14C36 olfactory receptor, family 14, subfamily C, member 36
OR1D4 olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene)
OR1F2P olfactory receptor, family 1, subfamily F, member 2, pseudogene
OR2K2 olfactory receptor, family 2, subfamily K, member 2
OR4K2 olfactory receptor, family 4, subfamily K, member 2
OR4K5 olfactory receptor, family 4, subfamily K, member 5
OR5AK2 olfactory receptor, family 5, subfamily AK, member 2
OR6B1 olfactory receptor, family 6, subfamily B, member 1
OR6T1 olfactory receptor, family 6, subfamily T, member 1
OR7G1 olfactory receptor, family 7, subfamily G, member 1
OTOP1 otopetrin 1
OTUD1 OTU deubiquitinase 1
PCDHB17P protocadherin beta 17 pseudogene
PCDHGA4 protocadherin gamma subfamily A, 4
PCDHGB1 protocadherin gamma subfamily B, 1
PDCD7 programmed cell death 7
PDE8B phosphodiesterase 8B
PEAK1 pseudopodium-enriched atypical kinase 1
PHYH phytanoyl-CoA 2-hydroxylase
PITRM1 pitrilysin metallopeptidase 1
PNN pinin, desmosome associated protein
POC5 POC5 centriolar protein
POLG polymerase (DNA directed), gamma
POLR2J2 polymerase (RNA) II (DNA directed) polypeptide J2
PRPF18 pre-mRNA processing factor 18
PRPF38B pre-mRNA processing factor 38B
PRPF39 pre-mRNA processing factor 39
PRPF4B pre-mRNA processing factor 4B
PRR21 proline rich 21
PRTG protogenin
PSG4 pregnancy specific beta-1-glycoprotein 4
PSG7 pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene)
PTPDC1 protein tyrosine phosphatase domain containing 1
RAET1E retinoic acid early transcript 1E
RBM17 RNA binding motif protein 17
RCCD1 RCC1 domain containing 1
RCN2 reticulocalbin 2, EF-hand calcium binding domain
RNPC3 RNA-binding region (RNP1, RRM) containing 3
RPL13AP6 ribosomal protein L13a pseudogene 6
RPL22 ribosomal protein L22
RPL4 ribosomal protein L4
RPL5 ribosomal protein L5
RPP38 ribonuclease P/MRP 38kDa subunit
RPS17 ribosomal protein S17
RPS26 ribosomal protein S26
SCARNA15 small Cajal body-specific RNA 15
SEC11A SEC11 homolog A (S. cerevisiae)
SF3B1 splicing factor 3b, subunit 1, 155kDa
SIK3 SIK family kinase 3
SIX4 SIX homeobox 4
SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2
SLITRK6 SLIT and NTRK-like family, member 6
SMAD3 SMAD family member 3
SMCO3 single-pass membrane protein with coiled-coil domains 3
SNORA13 small nucleolar RNA, H/ACA box 13
SNORA4 small nucleolar RNA, H/ACA box 4
SNORA51 small nucleolar RNA, H/ACA box 51
SNORA59B small nucleolar RNA, H/ACA box 59B
SNORD115-13 small nucleolar RNA, C/D box 115-13
SNORD116-28 small nucleolar RNA, C/D box 116-28
SNX33 sorting nexin 33
SPACA1 sperm acrosome associated 1
SPDYE4 speedy/RINGO cell cycle regulator family member E4
SPINK13 serine peptidase inhibitor, Kazal type 13 (putative)
SRRM1 serine/arginine repetitive matrix 1
SRRM2 serine/arginine repetitive matrix 2
SRSF11 serine/arginine-rich splicing factor 11
STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
STRA8 stimulated by retinoic acid 8
SUGT1P3 SUGT1 pseudogene 3
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae)
SUPT7L suppressor of Ty 7 (S. cerevisiae)-like
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
SYCP2L synaptonemal complex protein 2-like
SYNE3 spectrin repeat containing, nuclear envelope family member 3
TAF1 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
TARDBP TAR DNA binding protein
TAS2R39 taste receptor, type 2, member 39
TAS2R40 taste receptor, type 2, member 40
TBC1D2 TBC1 domain family, member 2
TBC1D26 TBC1 domain family, member 26
TBC1D3F TBC1 domain family, member 3F
TEX13B testis expressed 13B
THOC5 THO complex 5
TIGD1 tigger transposable element derived 1
TLDC2 TBC/LysM-associated domain containing 2
TM2D3 TM2 domain containing 3
TM4SF20 transmembrane 4 L six family member 20
TMCO6 transmembrane and coiled-coil domains 6
TMPRSS11B transmembrane protease, serine 11B
TMPRSS12 transmembrane (C-terminal) protease, serine 12
TNS2 tensin 2
TPP2 tripeptidyl peptidase II
TRA2A transformer 2 alpha homolog (Drosophila)
TRDMT1 tRNA aspartic acid methyltransferase 1
TRH thyrotropin-releasing hormone
TRMT13 tRNA methyltransferase 13 homolog (S. cerevisiae)
TTLL13P tubulin tyrosine ligase-like family member 13, pseudogene
UBE2Q2P1 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2
UGT2B28 UDP glucuronosyltransferase 2 family, polypeptide B28
UPF2 UPF2 regulator of nonsense transcripts homolog (yeast)
USP3 ubiquitin specific peptidase 3
USP6NL USP6 N-terminal like
VPS13C vacuolar protein sorting 13 homolog C (S. cerevisiae)
VPS33B vacuolar protein sorting 33 homolog B (yeast)
WAC WW domain containing adaptor with coiled-coil
WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules
XIST X inactive specific transcript (non-protein coding)
YME1L1 YME1-like 1 ATPase
ZCCHC5 zinc finger, CCHC domain containing 5
ZDHHC9 zinc finger, DHHC-type containing 9
ZFC3H1 zinc finger, C3H1-type containing
ZFYVE16 zinc finger, FYVE domain containing 16
ZNF248 zinc finger protein 248
ZNF25 zinc finger protein 25
ZNF280D zinc finger protein 280D
ZNF285 zinc finger protein 285
ZNF326 zinc finger protein 326
ZNF37A zinc finger protein 37A
ZNF529 zinc finger protein 529
ZNF565 zinc finger protein 565
ZNF592 zinc finger protein 592
ZNF708 zinc finger protein 708
ZNF781 zinc finger protein 781
ZRANB2 zinc finger, RAN-binding domain containing 2

low expression

Symbol Name
CPNE3 copine III
PJA1 praja ring finger 1, E3 ubiquitin protein ligase
SH3BP5L SH3-binding domain protein 5-like
SNUPN snurportin 1
TIRAP toll-interleukin 1 receptor (TIR) domain containing adaptor protein