Brain Lower Grade Glioma_LGG_TCGA-HT-8109-01A-11R-2404-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

295 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-HT-8109-01A-11R-2404-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ABI2 abl-interactor 2
ACADSB acyl-CoA dehydrogenase, short/branched chain
ACSL6 acyl-CoA synthetase long-chain family member 6
ACTL7A actin-like 7A
ACVR1C activin A receptor, type IC
AFM afamin
AKAP11 A kinase (PRKA) anchor protein 11
AKAP4 A kinase (PRKA) anchor protein 4
AKAP5 A kinase (PRKA) anchor protein 5
AMER2 APC membrane recruitment protein 2
ANKRD12 ankyrin repeat domain 12
ANKRD30A ankyrin repeat domain 30A
ARF3 ADP-ribosylation factor 3
ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
ARHGEF9 Cdc42 guanine nucleotide exchange factor (GEF) 9
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila)
ATP8A1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
ATP8A2 ATPase, aminophospholipid transporter, class I, type 8A, member 2
ATRN attractin
BAG4 BCL2-associated athanogene 4
BCL2L10 BCL2-like 10 (apoptosis facilitator)
C14ORF132 chromosome 14 open reading frame 132
C1QL3 complement component 1, q subcomponent-like 3
C22ORF24 chromosome 22 open reading frame 24
C2ORF69 chromosome 2 open reading frame 69
C4ORF50 chromosome 4 open reading frame 50
CACNA2D1 calcium channel, voltage-dependent, alpha 2/delta subunit 1
CALN1 calneuron 1
CAMK1D calcium/calmodulin-dependent protein kinase ID
CCDC144B coiled-coil domain containing 144B (pseudogene)
CCDC171 coiled-coil domain containing 171
CCIN calicin
CDH9 cadherin 9, type 2 (T1-cadherin)
CDK17 cyclin-dependent kinase 17
CDKL5 cyclin-dependent kinase-like 5
CFHR4 complement factor H-related 4
CHIC1 cysteine-rich hydrophobic domain 1
CHM choroideremia (Rab escort protein 1)
CHMP3 charged multivesicular body protein 3
CHRM3 cholinergic receptor, muscarinic 3
CLDN16 claudin 16
CNGB1 cyclic nucleotide gated channel beta 1
CPEB1 cytoplasmic polyadenylation element binding protein 1
CREBRF CREB3 regulatory factor
CREG2 cellular repressor of E1A-stimulated genes 2
CRYGC crystallin, gamma C
CSRNP3 cysteine-serine-rich nuclear protein 3
CXADRP3 coxsackie virus and adenovirus receptor pseudogene 3
CXCL5 chemokine (C-X-C motif) ligand 5
CYP24A1 cytochrome P450, family 24, subfamily A, polypeptide 1
CYP2C18 cytochrome P450, family 2, subfamily C, polypeptide 18
CYP7A1 cytochrome P450, family 7, subfamily A, polypeptide 1
DCAF8L2 DDB1 and CUL4 associated factor 8-like 2
DCK deoxycytidine kinase
DMRTC1 DMRT-like family C1
DMXL1 Dmx-like 1
DMXL2 Dmx-like 2
DNAJB14 DnaJ (Hsp40) homolog, subfamily B, member 14
DNAJB7 DnaJ (Hsp40) homolog, subfamily B, member 7
DNAJC27 DnaJ (Hsp40) homolog, subfamily C, member 27
DNAJC28 DnaJ (Hsp40) homolog, subfamily C, member 28
DNAJC6 DnaJ (Hsp40) homolog, subfamily C, member 6
DOK6 docking protein 6
DPP8 dipeptidyl-peptidase 8
DSG1 desmoglein 1
DTWD2 DTW domain containing 2
ELAVL2 ELAV like neuron-specific RNA binding protein 2
EPT1 ethanolaminephosphotransferase 1
F5 coagulation factor V (proaccelerin, labile factor)
FADS1 fatty acid desaturase 1
FAM126B family with sequence similarity 126, member B
FAM179B family with sequence similarity 179, member B
FAM196B family with sequence similarity 196, member B
FAM228A family with sequence similarity 228, member A
FAM49A family with sequence similarity 49, member A
FAM73A family with sequence similarity 73, member A
FANCD2OS FANCD2 opposite strand
FBXO47 F-box protein 47
FLG filaggrin
FNIP1 folliculin interacting protein 1
FRMPD4 FERM and PDZ domain containing 4
FRRS1L ferric-chelate reductase 1-like
FSD1L fibronectin type III and SPRY domain containing 1-like
G3BP2 GTPase activating protein (SH3 domain) binding protein 2
GABRA2 gamma-aminobutyric acid (GABA) A receptor, alpha 2
GABRB3 gamma-aminobutyric acid (GABA) A receptor, beta 3
GABRG3 gamma-aminobutyric acid (GABA) A receptor, gamma 3
GATC glutamyl-tRNA(Gln) amidotransferase, subunit C
GLIS3-AS1 GLIS3 antisense RNA 1
GLP2R glucagon-like peptide 2 receptor
GLTSCR1L GLTSCR1-like
GNRHR gonadotropin-releasing hormone receptor
GOLGA6L1 golgin A6 family-like 1
GPR142 G protein-coupled receptor 142
GPR149 G protein-coupled receptor 149
GPR63 G protein-coupled receptor 63
GPRIN2 G protein regulated inducer of neurite outgrowth 2
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B
GRM2 glutamate receptor, metabotropic 2
HCG18 HLA complex group 18 (non-protein coding)
HECW2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3
HHLA2 HERV-H LTR-associating 2
HIST1H1A histone cluster 1, H1a
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
HTR1A 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled
HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
HTR3A 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic
IDI1 isopentenyl-diphosphate delta isomerase 1
IFNA2 interferon, alpha 2
INIP INTS3 and NABP interacting protein
INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa
KAAG1 kidney associated antigen 1
KCNB1 potassium channel, voltage gated Shab related subfamily B, member 1
KCNH1 potassium channel, voltage gated eag related subfamily H, member 1
KCNJ9 potassium channel, inwardly rectifying subfamily J, member 9
KCTD16 potassium channel tetramerization domain containing 16
KGFLP1 fibroblast growth factor 7 pseudogene
KIAA0513 KIAA0513
KIAA1109 KIAA1109
KIAA1549L KIAA1549-like
KIAA2026 KIAA2026
KIF3B kinesin family member 3B
KIF5C kinesin family member 5C
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KLHL11 kelch-like family member 11
KRTAP10-6 keratin associated protein 10-6
KRTAP5-2 keratin associated protein 5-2
LHFPL1 lipoma HMGIC fusion partner-like 1
LIN54 lin-54 DREAM MuvB core complex component
LIPI lipase, member I
LMBRD2 LMBR1 domain containing 2
LOC100128554 uncharacterized LOC100128554
LOC200726 hCG1657980
LOC283731 uncharacterized LOC283731
LOC344967 acyl-CoA thioesterase 7 pseudogene
LY6G6E lymphocyte antigen 6 complex, locus G6E (pseudogene)
MAP9 microtubule-associated protein 9
MAPK1 mitogen-activated protein kinase 1
MBLAC2 metallo-beta-lactamase domain containing 2
MC3R melanocortin 3 receptor
MCHR2 melanin-concentrating hormone receptor 2
MEF2A myocyte enhancer factor 2A
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
MKL2 MKL/myocardin-like 2
MRGPRX3 MAS-related GPR, member X3
MRPL42P5 mitochondrial ribosomal protein L42 pseudogene 5
MSMO1 methylsterol monooxygenase 1
MSX2P1 msh homeobox 2 pseudogene 1
MT4 metallothionein 4
MTMR12 myotubularin related protein 12
MTMR6 myotubularin related protein 6
MTMR9 myotubularin related protein 9
MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase
MYO5A myosin VA (heavy chain 12, myoxin)
MYO9A myosin IXA
NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma
NBEA neurobeachin
NCOA7 nuclear receptor coactivator 7
NDFIP2 Nedd4 family interacting protein 2
NDST4 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
NEU2 sialidase 2 (cytosolic sialidase)
NEU3 sialidase 3 (membrane sialidase)
NHSL2 NHS-like 2
NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1
NPY neuropeptide Y
NRXN3 neurexin 3
NXF2B nuclear RNA export factor 2B
OPA1 optic atrophy 1 (autosomal dominant)
OPRM1 opioid receptor, mu 1
OR10A4 olfactory receptor, family 10, subfamily A, member 4
OR1J1 olfactory receptor, family 1, subfamily J, member 1
OR1L1 olfactory receptor, family 1, subfamily L, member 1
OR1L3 olfactory receptor, family 1, subfamily L, member 3
OR1L8 olfactory receptor, family 1, subfamily L, member 8
OR2AG1 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene)
OR2D3 olfactory receptor, family 2, subfamily D, member 3
OR51B4 olfactory receptor, family 51, subfamily B, member 4
OR51B5 olfactory receptor, family 51, subfamily B, member 5
OR52B2 olfactory receptor, family 52, subfamily B, member 2
OR52K1 olfactory receptor, family 52, subfamily K, member 1
OR52N4 olfactory receptor, family 52, subfamily N, member 4 (gene/pseudogene)
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
PAK3 p21 protein (Cdc42/Rac)-activated kinase 3
PCDH11Y protocadherin 11 Y-linked
PCDHA11 protocadherin alpha 11
PCDHA6 protocadherin alpha 6
PCDHGA11 protocadherin gamma subfamily A, 11
PCDHGA12 protocadherin gamma subfamily A, 12
PCDHGB8P protocadherin gamma subfamily B, 8 pseudogene
PCNX pecanex homolog (Drosophila)
PDPK1 3-phosphoinositide dependent protein kinase 1
PEG3 paternally expressed 3
PEG3-AS1 PEG3 antisense RNA 1
PEX5L peroxisomal biogenesis factor 5-like
PGBD4 piggyBac transposable element derived 4
PLA2G12A phospholipase A2, group XIIA
PLA2G12B phospholipase A2, group XIIB
PLEKHB2 pleckstrin homology domain containing, family B (evectins) member 2
PPIP5K1 diphosphoinositol pentakisphosphate kinase 1
PPP4R4 protein phosphatase 4, regulatory subunit 4
PREPL prolyl endopeptidase-like
PRKACG protein kinase, cAMP-dependent, catalytic, gamma
PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1
PSD3 pleckstrin and Sec7 domain containing 3
RAB27B RAB27B, member RAS oncogene family
RAB3B RAB3B, member RAS oncogene family
RAD21L1 RAD21-like 1 (S. pombe)
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2
RASGRF2 Ras protein-specific guanine nucleotide-releasing factor 2
RFPL1S RFPL1 antisense RNA 1
RGPD5 RANBP2-like and GRIP domain containing 5
RGS7BP regulator of G-protein signaling 7 binding protein
RIMS2 regulating synaptic membrane exocytosis 2
RLIM ring finger protein, LIM domain interacting
RNF141 ring finger protein 141
RNMT RNA (guanine-7-) methyltransferase
RPRD1A regulation of nuclear pre-mRNA domain containing 1A
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5
RTP3 receptor (chemosensory) transporter protein 3
RXFP3 relaxin/insulin-like family peptide receptor 3
SC5D sterol-C5-desaturase
SCAI suppressor of cancer cell invasion
SCAMP1 secretory carrier membrane protein 1
SCD stearoyl-CoA desaturase (delta-9-desaturase)
SCN2A sodium channel, voltage gated, type II alpha subunit
SCN3B sodium channel, voltage gated, type III beta subunit
SCN8A sodium channel, voltage gated, type VIII alpha subunit
SEL1L sel-1 suppressor of lin-12-like (C. elegans)
SERINC3 serine incorporator 3
SHCBP1L SHC SH2-domain binding protein 1-like
SIRPB1 signal-regulatory protein beta 1
SLC16A7 solute carrier family 16 (monocarboxylate transporter), member 7
SLC23A2 solute carrier family 23 (ascorbic acid transporter), member 2
SLC25A51P1 solute carrier family 25, member 51 pseudogene 1
SLC26A4 solute carrier family 26 (anion exchanger), member 4
SLC30A4 solute carrier family 30 (zinc transporter), member 4
SLC38A1 solute carrier family 38, member 1
SLC7A14 solute carrier family 7, member 14
SNORD115-7 small nucleolar RNA, C/D box 115-7
SRRM4 serine/arginine repetitive matrix 4
STARD4 StAR-related lipid transfer (START) domain containing 4
STH saitohin
STOX2 storkhead box 2
STXBP5 syntaxin binding protein 5 (tomosyn)
STXBP6 syntaxin binding protein 6 (amisyn)
SYT14 synaptotagmin XIV
SYT16 synaptotagmin XVI
SYTL2 synaptotagmin-like 2
TAAR6 trace amine associated receptor 6
TAS2R8 taste receptor, type 2, member 8
TBATA thymus, brain and testes associated
TBC1D3P1-DHX40P1 TBC1D3P1-DHX40P1 readthrough transcribed pseudogene
TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3
TEPP testis, prostate and placenta expressed
TEX33 testis expressed 33
TEX37 testis expressed 37
TGM6 transglutaminase 6
THRB thyroid hormone receptor, beta
TMEM215 transmembrane protein 215
TMEM245 transmembrane protein 245
TMEM40 transmembrane protein 40
TRAPPC6B trafficking protein particle complex 6B
TRIM2 tripartite motif containing 2
TRIM44 tripartite motif containing 44
TRPC5 transient receptor potential cation channel, subfamily C, member 5
TRUB1 TruB pseudouridine (psi) synthase family member 1
TSNAX-DISC1 TSNAX-DISC1 readthrough (NMD candidate)
TTBK2 tau tubulin kinase 2
TTC33 tetratricopeptide repeat domain 33
UBE2K ubiquitin-conjugating enzyme E2K
UBE2W ubiquitin-conjugating enzyme E2W (putative)
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative)
UCN3 urocortin 3
UHRF1BP1L UHRF1 binding protein 1-like
UNC5D unc-5 homolog D (C. elegans)
USP12 ubiquitin specific peptidase 12
USP32 ubiquitin specific peptidase 32
VIP vasoactive intestinal peptide
VN1R4 vomeronasal 1 receptor 4
WDFY3 WD repeat and FYVE domain containing 3
WDR17 WD repeat domain 17
WDR7 WD repeat domain 7
ZDBF2 zinc finger, DBF-type containing 2
ZDHHC21 zinc finger, DHHC-type containing 21
ZIM2 zinc finger, imprinted 2
ZIM3 zinc finger, imprinted 3
ZNF215 zinc finger protein 215
ZPBP zona pellucida binding protein

low expression

Symbol Name
C1ORF131 chromosome 1 open reading frame 131
GGPS1 geranylgeranyl diphosphate synthase 1
GNPAT glyceronephosphate O-acyltransferase
RBM34 RNA binding motif protein 34