Brain Lower Grade Glioma_LGG_TCGA-FG-7636-01A-11R-2090-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

199 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-FG-7636-01A-11R-2090-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
ACKR3 atypical chemokine receptor 3
ACY3 aminoacylase 3
ADAM29 ADAM metallopeptidase domain 29
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5
ALDOC aldolase C, fructose-bisphosphate
ALKBH1 alkB, alkylation repair homolog 1 (E. coli)
ANKRD28 ankyrin repeat domain 28
ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head)
ATP11AUN ATP11A upstream neighbor
ATP5G2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)
ATXN7L3B ataxin 7-like 3B
BCAN brevican
BCL6 B-cell CLL/lymphoma 6
BMPER BMP binding endothelial regulator
BSDC1 BSD domain containing 1
BTG1 B-cell translocation gene 1, anti-proliferative
C18ORF21 chromosome 18 open reading frame 21
C2ORF78 chromosome 2 open reading frame 78
C3ORF79 chromosome 3 open reading frame 79
C4ORF45 chromosome 4 open reading frame 45
C8A complement component 8, alpha polypeptide
CA10 carbonic anhydrase X
CCDC115 coiled-coil domain containing 115
CCDC27 coiled-coil domain containing 27
CD82 CD82 molecule
CECR6 cat eye syndrome chromosome region, candidate 6
CHRDL1 chordin-like 1
CIB4 calcium and integrin binding family member 4
CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand
COPZ1 coatomer protein complex, subunit zeta 1
CORO7 coronin 7
CPXM1 carboxypeptidase X (M14 family), member 1
CR1L complement component (3b/4b) receptor 1-like
CRMP1 collapsin response mediator protein 1
CTNND2 catenin (cadherin-associated protein), delta 2
CTRB1 chymotrypsinogen B1
DAAM2 dishevelled associated activator of morphogenesis 2
DACH1 dachshund family transcription factor 1
DAZ1 deleted in azoospermia 1
DEPDC4 DEP domain containing 4
DLK2 delta-like 2 homolog (Drosophila)
DNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 12
EEF1A1P9 eukaryotic translation elongation factor 1 alpha 1 pseudogene 9
EFHB EF-hand domain family, member B
EFNA3 ephrin-A3
EHD1 EH-domain containing 1
ELMO2 engulfment and cell motility 2
EPB41L4A erythrocyte membrane protein band 4.1 like 4A
ERBB3 erb-b2 receptor tyrosine kinase 3
ESX1 ESX homeobox 1
ETV1 ets variant 1
FAM104A family with sequence similarity 104, member A
FAM120C family with sequence similarity 120C
FAM222B family with sequence similarity 222, member B
FAM57B family with sequence similarity 57, member B
FAM65B family with sequence similarity 65, member B
FAM90A1 family with sequence similarity 90, member A1
FCRLA Fc receptor-like A
FOXP2 forkhead box P2
FRAT1 frequently rearranged in advanced T-cell lymphomas 1
FZD9 frizzled class receptor 9
GDPD4 glycerophosphodiester phosphodiesterase domain containing 4
GNAT3 guanine nucleotide binding protein, alpha transducing 3
GNRHR2 gonadotropin-releasing hormone (type 2) receptor 2, pseudogene
GOLGA7 golgin A7
GPATCH3 G patch domain containing 3
GPR101 G protein-coupled receptor 101
GPR153 G protein-coupled receptor 153
GSTM2 glutathione S-transferase mu 2 (muscle)
GSTM3 glutathione S-transferase mu 3 (brain)
HACL1 2-hydroxyacyl-CoA lyase 1
HIPK2 homeodomain interacting protein kinase 2
HIST1H3A histone cluster 1, H3a
HRNR hornerin
HTATSF1 HIV-1 Tat specific factor 1
HYAL3 hyaluronoglucosaminidase 3
KCNK2 potassium channel, two pore domain subfamily K, member 2
KCTD5 potassium channel tetramerization domain containing 5
KDM8 lysine (K)-specific demethylase 8
KIAA0226 KIAA0226
KRT38 keratin 38, type I
KRTAP11-1 keratin associated protein 11-1
KRTAP19-1 keratin associated protein 19-1
LINC00341 long intergenic non-protein coding RNA 341
LOC146481
LOC284661 uncharacterized LOC284661
LOC646999 akirin 1 pseudogene
LOC729609 uncharacterized LOC729609
LRIF1 ligand dependent nuclear receptor interacting factor 1
LRRC47 leucine rich repeat containing 47
LUZP2 leucine zipper protein 2
MANEAL mannosidase, endo-alpha-like
MARCKSL1 MARCKS-like 1
MDFI MyoD family inhibitor
MEP1B meprin A, beta
METTL12 methyltransferase like 12
MRPS25 mitochondrial ribosomal protein S25
MYLK4 myosin light chain kinase family, member 4
NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit
NACA nascent polypeptide-associated complex alpha subunit
NAP1L1 nucleosome assembly protein 1-like 1
NATD1 N-acetyltransferase domain containing 1
NCBP2 nuclear cap binding protein subunit 2, 20kDa
NES nestin
NFYB nuclear transcription factor Y, beta
NFYC nuclear transcription factor Y, gamma
NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
NUDT4 nudix (nucleoside diphosphate linked moiety X)-type motif 4
OPN1LW opsin 1 (cone pigments), long-wave-sensitive
OR1L4 olfactory receptor, family 1, subfamily L, member 4
OR4N2 olfactory receptor, family 4, subfamily N, member 2
OR51Q1 olfactory receptor, family 51, subfamily Q, member 1 (gene/pseudogene)
OR5B17 olfactory receptor, family 5, subfamily B, member 17
OR5B3 olfactory receptor, family 5, subfamily B, member 3
OR7D4 olfactory receptor, family 7, subfamily D, member 4
OR8D4 olfactory receptor, family 8, subfamily D, member 4
PATZ1 POZ (BTB) and AT hook containing zinc finger 1
PCBP2 poly(rC) binding protein 2
PCDHGA11 protocadherin gamma subfamily A, 11
PCDHGA8 protocadherin gamma subfamily A, 8
PCDHGB4 protocadherin gamma subfamily B, 4
PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime
PDE9A phosphodiesterase 9A
PEX10 peroxisomal biogenesis factor 10
PHF23 PHD finger protein 23
PHGDH phosphoglycerate dehydrogenase
PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta
POLR2F polymerase (RNA) II (DNA directed) polypeptide F
POMGNT2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
POMT2 protein-O-mannosyltransferase 2
POU2F1 POU class 2 homeobox 1
PRR5-ARHGAP8 PRR5-ARHGAP8 readthrough
PWARSN Prader Willi/Angelman region RNA, SNRPN neighbor
RBMXL2 RNA binding motif protein, X-linked-like 2
RPL11 ribosomal protein L11
RPL3 ribosomal protein L3
RPL35A ribosomal protein L35a
RPL5 ribosomal protein L5
RPL7A ribosomal protein L7a
RPS26P11 ribosomal protein S26 pseudogene 11
RPS28 ribosomal protein S28
SCRT2 scratch family zinc finger 2
SDR9C7 short chain dehydrogenase/reductase family 9C, member 7
SEPT2 septin 2
SEZ6 seizure related 6 homolog (mouse)
SH3BP4 SH3-domain binding protein 4
SIX1 SIX homeobox 1
SLC22A6 solute carrier family 22 (organic anion transporter), member 6
SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
SMIM21 small integral membrane protein 21
SNORA62 small nucleolar RNA, H/ACA box 62
SNX1 sorting nexin 1
SNX11 sorting nexin 11
SNX22 sorting nexin 22
SP2 Sp2 transcription factor
SPPL3 signal peptide peptidase like 3
SRSF8 serine/arginine-rich splicing factor 8
SULF2 sulfatase 2
SUSD5 sushi domain containing 5
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
THRA thyroid hormone receptor, alpha
TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2
TMEM180 transmembrane protein 180
TMEM206 transmembrane protein 206
TMEM222 transmembrane protein 222
TMEM41A transmembrane protein 41A
TNS3 tensin 3
TOR2A torsin family 2, member A
TPH1 tryptophan hydroxylase 1
TRAM2 translocation associated membrane protein 2
TRIM62 tripartite motif containing 62
TSHZ1 teashirt zinc finger homeobox 1
TSPY1 testis specific protein, Y-linked 1
TTLL8 tubulin tyrosine ligase-like family member 8
UBE2DNL ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene)
UBE2V1 ubiquitin-conjugating enzyme E2 variant 1
USH1C Usher syndrome 1C (autosomal recessive, severe)
USP26 ubiquitin specific peptidase 26
USP43 ubiquitin specific peptidase 43
WASF3 WAS protein family, member 3
WNT9B wingless-type MMTV integration site family, member 9B
WRNIP1 Werner helicase interacting protein 1
ZCCHC17 zinc finger, CCHC domain containing 17
ZCCHC24 zinc finger, CCHC domain containing 24
ZEB1 zinc finger E-box binding homeobox 1
ZKSCAN2 zinc finger with KRAB and SCAN domains 2
ZNF362 zinc finger protein 362
ZNF490 zinc finger protein 490
ZNF629 zinc finger protein 629
ZNF652 zinc finger protein 652
ZNF826P zinc finger protein 826, pseudogene

low expression

Symbol Name
C4ORF29 chromosome 4 open reading frame 29
MTO1 mitochondrial tRNA translation optimization 1
PEX3 peroxisomal biogenesis factor 3
SCCPDH saccharopine dehydrogenase (putative)
USP45 ubiquitin specific peptidase 45