Brain Lower Grade Glioma_LGG_TCGA-DU-A6S3-01A-12R-A32Q-07 Gene Set

Dataset TCGA Signatures of Differentially Expressed Genes for Tumors
Category transcriptomics
Type tissue sample
Description tissue sample derived from Brain Lower Grade Glioma_LGG (The Cancer Genome Atlas)
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Genes

385 genes with high or low expression in Brain Lower Grade Glioma_LGG_TCGA-DU-A6S3-01A-12R-A32Q-07 relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.

high expression

Symbol Name
AARS2 alanyl-tRNA synthetase 2, mitochondrial
ADAM21 ADAM metallopeptidase domain 21
ADGRA1 adhesion G protein-coupled receptor A1
ADGRL1 adhesion G protein-coupled receptor L1
AES amino-terminal enhancer of split
AHSA1 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)
ANKRD24 ankyrin repeat domain 24
AP3D1 adaptor-related protein complex 3, delta 1 subunit
APC2 adenomatosis polyposis coli 2
ARHGDIG Rho GDP dissociation inhibitor (GDI) gamma
ASAH2 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2
ASAP1-IT1 ASAP1 intronic transcript 1
ASGR1 asialoglycoprotein receptor 1
ASPDH aspartate dehydrogenase domain containing
ASPHD1 aspartate beta-hydroxylase domain containing 1
ATCAY ataxia, cerebellar, Cayman type
AXIN1 axin 1
BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
BARHL1 BarH-like homeobox 1
BCYRN1 brain cytoplasmic RNA 1
BPI bactericidal/permeability-increasing protein
BRDT bromodomain, testis-specific
BTBD2 BTB (POZ) domain containing 2
C12ORF10 chromosome 12 open reading frame 10
C17ORF78 chromosome 17 open reading frame 78
C6ORF10 chromosome 6 open reading frame 10
C8ORF86 chromosome 8 open reading frame 86
CACNG2 calcium channel, voltage-dependent, gamma subunit 2
CAMLG calcium modulating ligand
CAMSAP3 calmodulin regulated spectrin-associated protein family, member 3
CASKIN1 CASK interacting protein 1
CBFA2T3 core-binding factor, runt domain, alpha subunit 2; translocated to, 3
CCDC105 coiled-coil domain containing 105
CCER1 coiled-coil glutamate-rich protein 1
CDH24 cadherin 24, type 2
CDK5R2 cyclin-dependent kinase 5, regulatory subunit 2 (p39)
CDR1 cerebellar degeneration-related protein 1, 34kDa
CGREF1 cell growth regulator with EF-hand domain 1
CHGB chromogranin B
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal)
CIR1 corepressor interacting with RBPJ, 1
CIZ1 CDKN1A interacting zinc finger protein 1
CNTFR ciliary neurotrophic factor receptor
COX7B2 cytochrome c oxidase subunit VIIb2
CPLX1 complexin 1
CREB3L4 cAMP responsive element binding protein 3-like 4
CSNK2A2 casein kinase 2, alpha prime polypeptide
CTAG2 cancer/testis antigen 2
CYMP chymosin pseudogene
CYP4A11 cytochrome P450, family 4, subfamily A, polypeptide 11
DACT3 dishevelled-binding antagonist of beta-catenin 3
DBN1 drebrin 1
DISC2 disrupted in schizophrenia 2 (non-protein coding)
DLG4 discs, large homolog 4 (Drosophila)
DLGAP4 discs, large (Drosophila) homolog-associated protein 4
DNAJC4 DnaJ (Hsp40) homolog, subfamily C, member 4
DNTT DNA nucleotidylexotransferase
DOK4 docking protein 4
DRD4 dopamine receptor D4
DTD1 D-tyrosyl-tRNA deacylase 1
ECSIT ECSIT signalling integrator
EEF2 eukaryotic translation elongation factor 2
EHMT2 euchromatic histone-lysine N-methyltransferase 2
EIF3C eukaryotic translation initiation factor 3, subunit C
ELMO1 engulfment and cell motility 1
ETV5 ets variant 5
EVI5L ecotropic viral integration site 5-like
FAM170A family with sequence similarity 170, member A
FAM189B family with sequence similarity 189, member B
FAM65A family with sequence similarity 65, member A
FAM66A family with sequence similarity 66, member A
FAM90A7P putative protein FAM90A7
FBLL1 fibrillarin-like 1
FBXL19 F-box and leucine-rich repeat protein 19
FGFBP3 fibroblast growth factor binding protein 3
FLVCR1-AS1 FLVCR1 antisense RNA 1 (head to head)
FOXF2 forkhead box F2
FOXQ1 forkhead box Q1
FRG2 FSHD region gene 2
FRS3 fibroblast growth factor receptor substrate 3
FTX FTX transcript, XIST regulator (non-protein coding)
FXR2 fragile X mental retardation, autosomal homolog 2
GDAP1L1 ganglioside induced differentiation associated protein 1-like 1
GIT1 G protein-coupled receptor kinase interacting ArfGAP 1
GLIS2 GLIS family zinc finger 2
GMEB2 glucocorticoid modulatory element binding protein 2
GML glycosylphosphatidylinositol anchored molecule like
GPR142 G protein-coupled receptor 142
GPRIN1 G protein regulated inducer of neurite outgrowth 1
GPSM1 G-protein signaling modulator 1
GRIPAP1 GRIP1 associated protein 1
GSTA1 glutathione S-transferase alpha 1
GSX1 GS homeobox 1
GTF2F1 general transcription factor IIF, polypeptide 1, 74kDa
GUSBP4 glucuronidase, beta pseudogene 4
HCG9 HLA complex group 9 (non-protein coding)
HDAC5 histone deacetylase 5
HES6 hes family bHLH transcription factor 6
HIRIP3 HIRA interacting protein 3
HIST1H1E histone cluster 1, H1e
HIST1H2AB histone cluster 1, H2ab
HIST1H2BB histone cluster 1, H2bb
HIST1H3A histone cluster 1, H3a
HIST1H3I histone cluster 1, H3i
HIST1H4B histone cluster 1, H4b
HIST1H4C histone cluster 1, H4c
HIST1H4E histone cluster 1, H4e
HIST2H2AB histone cluster 2, H2ab
HMP19 HMP19 protein
HNF1A HNF1 homeobox A
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1
HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2
HR hair growth associated
HSF4 heat shock transcription factor 4
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1
HSP90AB2P heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene
HSP90AB4P heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene
HTR6 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled
IFNA1 interferon, alpha 1
IL11RA interleukin 11 receptor, alpha
IL17REL interleukin 17 receptor E-like
IMPDH2 IMP (inosine 5'-monophosphate) dehydrogenase 2
ITGA2B integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)
ITPK1-AS1 ITPK1 antisense RNA 1
JPH3 junctophilin 3
JPH4 junctophilin 4
KCNIP3 Kv channel interacting protein 3, calsenilin
KCNIP4-IT1 KCNIP4 intronic transcript 1
KCNK3 potassium channel, two pore domain subfamily K, member 3
KCNN1 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 1
KLC4 kinesin light chain 4
KRT3 keratin 3, type II
KRT34 keratin 34, type I
KRT83 keratin 83, type II
KRTAP4-8 keratin associated protein 4-8
KRTAP4-9 keratin associated protein 4-9
KRTAP5-4 keratin associated protein 5-4
KRTAP5-6 keratin associated protein 5-6
LIMK1 LIM domain kinase 1
LINC00161 long intergenic non-protein coding RNA 161
LINC00469 long intergenic non-protein coding RNA 469
LINC01599 long intergenic non-protein coding RNA 1599
LOC100130264 uncharacterized LOC100130264
LOC285692 uncharacterized LOC285692
LOC285696 uncharacterized LOC285696
LOC644145 exocyst complex component 1 pseudogene
LPAR2 lysophosphatidic acid receptor 2
LPAR3 lysophosphatidic acid receptor 3
LRRC75B leucine rich repeat containing 75B
LY6G6E lymphocyte antigen 6 complex, locus G6E (pseudogene)
MAP1S microtubule-associated protein 1S
MAP2K7 mitogen-activated protein kinase kinase 7
MAP3K10 mitogen-activated protein kinase kinase kinase 10
MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2
MARCH4 membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase
MATK megakaryocyte-associated tyrosine kinase
MAZ MYC-associated zinc finger protein (purine-binding transcription factor)
MCCD1 mitochondrial coiled-coil domain 1
MICAL1 microtubule associated monooxygenase, calponin and LIM domain containing 1
MLLT6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
MNT MAX network transcriptional repressor
MORC2 MORC family CW-type zinc finger 2
MRPL10 mitochondrial ribosomal protein L10
MRPL45 mitochondrial ribosomal protein L45
MSI1 musashi RNA-binding protein 1
MT1IP metallothionein 1I, pseudogene
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYH7B myosin, heavy chain 7B, cardiac muscle, beta
NACC1 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
NAP1L1 nucleosome assembly protein 1-like 1
NCL nucleolin
NIPSNAP1 nipsnap homolog 1 (C. elegans)
NLGN2 neuroligin 2
NOB1 NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
NOG noggin
NONO non-POU domain containing, octamer-binding
NOVA2 neuro-oncological ventral antigen 2
NPBWR2 neuropeptides B/W receptor 2
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NPPA natriuretic peptide A
NPRL3 nitrogen permease regulator-like 3 (S. cerevisiae)
NSA2 NSA2 ribosome biogenesis homolog (S. cerevisiae)
NXF4 nuclear RNA export factor 4 pseudogene
NXNL1 nucleoredoxin-like 1
ODF4 outer dense fiber of sperm tails 4
OR11H4 olfactory receptor, family 11, subfamily H, member 4
OR1B1 olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene)
OR1J4 olfactory receptor, family 1, subfamily J, member 4
OR2AK2 olfactory receptor, family 2, subfamily AK, member 2
OR2T8 olfactory receptor, family 2, subfamily T, member 8
OR4K17 olfactory receptor, family 4, subfamily K, member 17
OR4M1 olfactory receptor, family 4, subfamily M, member 1
OR5B21 olfactory receptor, family 5, subfamily B, member 21
OR6A2 olfactory receptor, family 6, subfamily A, member 2
OTUD5 OTU deubiquitinase 5
P2RX6P purinergic receptor P2X, ligand gated ion channel, 6 pseudogene
PACS1 phosphofurin acidic cluster sorting protein 1
PALM paralemmin
PANX2 pannexin 2
PAX1 paired box 1
PCDHA6 protocadherin alpha 6
PCDHB14 protocadherin beta 14
PCDHB17P protocadherin beta 17 pseudogene
PCDHGA12 protocadherin gamma subfamily A, 12
PDE4A phosphodiesterase 4A, cAMP-specific
PDZD4 PDZ domain containing 4
PELP1 proline, glutamate and leucine rich protein 1
PIANP PILR alpha associated neural protein
PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
PLA2G4E phospholipase A2, group IVE
PLCXD1 phosphatidylinositol-specific phospholipase C, X domain containing 1
PODXL2 podocalyxin-like 2
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
POLR2F polymerase (RNA) II (DNA directed) polypeptide F
POLR2J3 polymerase (RNA) II (DNA directed) polypeptide J3
POU4F3 POU class 4 homeobox 3
PPP1R12C protein phosphatase 1, regulatory subunit 12C
PPP1R9B protein phosphatase 1, regulatory subunit 9B
PRB1 proline-rich protein BstNI subfamily 1
PRB2 proline-rich protein BstNI subfamily 2
PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
PSD pleckstrin and Sec7 domain containing
PSKH2 protein serine kinase H2
PTMS parathymosin
PYDC2 pyrin domain containing 2
R3HDM2 R3H domain containing 2
RAB11FIP3 RAB11 family interacting protein 3 (class II)
RABL6 RAB, member RAS oncogene family-like 6
RAI2 retinoic acid induced 2
RASL10B RAS-like, family 10, member B
RCOR2 REST corepressor 2
REXO1 REX1, RNA exonuclease 1 homolog (S. cerevisiae)
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene
RHOBTB2 Rho-related BTB domain containing 2
RIMBP3 RIMS binding protein 3
RIMBP3C RIMS binding protein 3C
RIPPLY2 ripply transcriptional repressor 2
RMND5B required for meiotic nuclear division 5 homolog B (S. cerevisiae)
RMRP RNA component of mitochondrial RNA processing endoribonuclease
RNASE8 ribonuclease, RNase A family, 8
RNF112 ring finger protein 112
RNF113A ring finger protein 113A
RNF44 ring finger protein 44
RNF5P1 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1
RNU11 RNA, U11 small nuclear
RNU6ATAC RNA, U6atac small nuclear (U12-dependent splicing)
RPH3A rabphilin 3A
RPL13AP17 ribosomal protein L13a pseudogene 17
RPPH1 ribonuclease P RNA component H1
RPS23 ribosomal protein S23
RPS26 ribosomal protein S26
RUNDC3A RUN domain containing 3A
SAFB scaffold attachment factor B
SAMD10 sterile alpha motif domain containing 10
SAPCD2 suppressor APC domain containing 2
SBK1 SH3 domain binding kinase 1
SCARNA10 small Cajal body-specific RNA 10
SCARNA12 small Cajal body-specific RNA 12
SCARNA16 small Cajal body-specific RNA 16
SCARNA17 small Cajal body-specific RNA 17
SCARNA2 small Cajal body-specific RNA 2
SCARNA5 small Cajal body-specific RNA 5
SCARNA6 small Cajal body-specific RNA 6
SCARNA7 small Cajal body-specific RNA 7
SCARNA8 small Cajal body-specific RNA 8
SCARNA9 small Cajal body-specific RNA 9
SCRT1 scratch family zinc finger 1
SCT secretin
SEMA6B sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
SEZ6L2 seizure related 6 homolog (mouse)-like 2
SF1 splicing factor 1
SIGMAR1 sigma non-opioid intracellular receptor 1
SLC16A13 solute carrier family 16, member 13
SLC19A3 solute carrier family 19 (thiamine transporter), member 3
SLC22A24 solute carrier family 22, member 24
SLC25A2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2
SLC25A23 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12
SLC9A3R2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
SMN1 survival of motor neuron 1, telomeric
SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)
SNORA12 small nucleolar RNA, H/ACA box 12
SNORA20 small nucleolar RNA, H/ACA box 20
SNORA23 small nucleolar RNA, H/ACA box 23
SNORA27 small nucleolar RNA, H/ACA box 27
SNORA34 small nucleolar RNA, H/ACA box 34
SNORA37 small nucleolar RNA, H/ACA box 37
SNORA38 small nucleolar RNA, H/ACA box 38
SNORA40 small nucleolar RNA, H/ACA box 40
SNORA45A small nucleolar RNA, H/ACA box 45A
SNORA45B small nucleolar RNA, H/ACA box 45B
SNORA46 small nucleolar RNA, H/ACA box 46
SNORA47 small nucleolar RNA, H/ACA box 47
SNORA48 small nucleolar RNA, H/ACA box 48
SNORA49 small nucleolar RNA, H/ACA box 49
SNORA51 small nucleolar RNA, H/ACA box 51
SNORA53 small nucleolar RNA, H/ACA box 53
SNORA57 small nucleolar RNA, H/ACA box 57
SNORA5A small nucleolar RNA, H/ACA box 5A
SNORA6 small nucleolar RNA, H/ACA box 6
SNORA62 small nucleolar RNA, H/ACA box 62
SNORA63 small nucleolar RNA, H/ACA box 63
SNORA64 small nucleolar RNA, H/ACA box 64
SNORA71D small nucleolar RNA, H/ACA box 71D
SNORA74A small nucleolar RNA, H/ACA box 74A
SNORA74B small nucleolar RNA, H/ACA box 74B
SNORA75 small nucleolar RNA, H/ACA box 75
SNORA76C small nucleolar RNA, H/ACA box 76C
SNORA77 small nucleolar RNA, H/ACA box 77
SNORA79 small nucleolar RNA, H/ACA box 79
SNORA81 small nucleolar RNA, H/ACA box 81
SNORA84 small nucleolar RNA, H/ACA box 84
SNORA9 small nucleolar RNA, H/ACA box 9
SNORD10 small nucleolar RNA, C/D box 10
SNORD15B small nucleolar RNA, C/D box 15B
SNORD17 small nucleolar RNA, C/D box 17
SNORD94 small nucleolar RNA, C/D box 94
SNORD97 small nucleolar RNA, C/D box 97
SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1
SOST sclerostin
SOX12 SRY (sex determining region Y)-box 12
SOX18 SRY (sex determining region Y)-box 18
SPAG7 sperm associated antigen 7
SPDYE1 speedy/RINGO cell cycle regulator family member E1
SPDYE2 speedy/RINGO cell cycle regulator family member E2
SPDYE5 speedy/RINGO cell cycle regulator family member E5
SPDYE6 speedy/RINGO cell cycle regulator family member E6
SPDYE7P speedy/RINGO cell cycle regulator family member E7, pseudogene
SPIRE2 spire-type actin nucleation factor 2
SPTBN2 spectrin, beta, non-erythrocytic 2
SRC SRC proto-oncogene, non-receptor tyrosine kinase
STAR steroidogenic acute regulatory protein
STX1B syntaxin 1B
SVOP SV2 related protein homolog (rat)
TACC2 transforming, acidic coiled-coil containing protein 2
TAS2R39 taste receptor, type 2, member 39
TBC1D10B TBC1 domain family, member 10B
TBKBP1 TBK1 binding protein 1
TCEAL2 transcription elongation factor A (SII)-like 2
TCEAL4 transcription elongation factor A (SII)-like 4
TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
TCOF1 Treacher Collins-Franceschetti syndrome 1
TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3
TERC telomerase RNA component
TFAP4 transcription factor AP-4 (activating enhancer binding protein 4)
TLX1NB TLX1 neighbor
TMEM101 transmembrane protein 101
TMEM179 transmembrane protein 179
TMEM211 transmembrane protein 211
TMEM253 transmembrane protein 253
TMEM8B transmembrane protein 8B
TNNT1 troponin T type 1 (skeletal, slow)
TRIM43 tripartite motif containing 43
TRIM51 tripartite motif-containing 51
TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
TTLL12 tubulin tyrosine ligase-like family member 12
TTLL2 tubulin tyrosine ligase-like family member 2
TTTY6 testis-specific transcript, Y-linked 6 (non-protein coding)
TUBG2 tubulin, gamma 2
TYSND1 trypsin domain containing 1
UBALD1 UBA-like domain containing 1
UBTF upstream binding transcription factor, RNA polymerase I
UBXN6 UBX domain protein 6
UPK2 uroplakin 2
UPK3BL uroplakin 3B-like
USP27X ubiquitin specific peptidase 27, X-linked
UTP14A UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
VILL villin-like
VPS9D1 VPS9 domain containing 1
VWA5B2 von Willebrand factor A domain containing 5B2
WDR74 WD repeat domain 74
ZBTB7A zinc finger and BTB domain containing 7A
ZC3H7B zinc finger CCCH-type containing 7B
ZDHHC22 zinc finger, DHHC-type containing 22
ZMAT2 zinc finger, matrin-type 2
ZMIZ2 zinc finger, MIZ-type containing 2
ZNF219 zinc finger protein 219
ZSWIM4 zinc finger, SWIM-type containing 4

low expression

Symbol Name
FBXL5 F-box and leucine-rich repeat protein 5
PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2
UBA3 ubiquitin-like modifier activating enzyme 3
VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae)
ZMYM6 zinc finger, MYM-type 6