Bone mineral density Gene Set

Dataset GWAS Catalog SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description The amount of mineral per square centimeter of BONE. This is the definition used in clinical practice. Actual bone density would be expressed in grams per milliliter. It is most frequently measured by X-RAY ABSORPTIOMETRY or TOMOGRAPHY, X RAY COMPUTED. Bone density is an important predictor for OSTEOPOROSIS. (Experimental Factor Ontology, EFO_0003923)
External Link https://www.ebi.ac.uk/gwas/search?query=Bone mineral density
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Genes

51 genes associated with the Bone mineral density phenotype in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
WNT16 wingless-type MMTV integration site family, member 16 1.55662
C7ORF76 chromosome 7 open reading frame 76 1.51583
COLEC10 collectin sub-family member 10 (C-type lectin) 1.40858
CCDC170 coiled-coil domain containing 170 1.34768
LOC102724957 uncharacterized LOC102724957 1.31948
FAM3C family with sequence similarity 3, member C 1.23746
LRP5 low density lipoprotein receptor-related protein 5 1.20529
C17ORF53 chromosome 17 open reading frame 53 1.15711
FUBP3 far upstream element (FUSE) binding protein 3 1.10796
SP7 Sp7 transcription factor 1.04318
JAG1 jagged 1 1.00661
SMG6 SMG6 nonsense mediated mRNA decay factor 0.987567
MEF2C-AS1 MEF2C antisense RNA 1 0.955681
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 0.939467
AXIN1 axin 1 0.910257
MPP7 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) 0.896275
MARK3 MAP/microtubule affinity-regulating kinase 3 0.877381
IDUA iduronidase, alpha-L- 0.831366
DNM3 dynamin 3 0.819545
SMOC1 SPARC related modular calcium binding 1 0.734471
NME8 NME/NM23 family member 8 0.725138
LEKR1 leucine, glutamate and lysine rich 1 0.679413
CPED1 cadherin-like and PC-esterase domain containing 1 0.637972
DCDC5 doublecortin domain containing 5 0.637972
MAPT microtubule-associated protein tau 0.612268
GPATCH1 G patch domain containing 1 0.602611
PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 0.572839
KIAA2018 KIAA2018 0.552116
CPN1 carboxypeptidase N, polypeptide 1 0.526478
TMEM263 transmembrane protein 263 0.522843
FMN2 formin 2 0.499091
CLDN14 claudin 14 0.472799
ABCF2 ATP-binding cassette, sub-family F (GCN20), member 2 0.449549
MEF2C myocyte enhancer factor 2C 0.439318
ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 0.405958
RPL37AP7 ribosomal protein L37a pseudogene 7 0.369252
FAM210A family with sequence similarity 210, member A 0.369252
XKR9 XK, Kell blood group complex subunit-related family, member 9 0.314454
RSPH14 radial spoke head 14 homolog (Chlamydomonas) 0.314454
IBSP integrin-binding sialoprotein 0.238523
LOC100133286 uncharacterized LOC100133286 0.22914
CTNNBL1 catenin, beta like 1 0.220915
LOC100507377 uncharacterized LOC100507377 0.220915
TGFBR3 transforming growth factor, beta receptor III 0.220915
BET1L Bet1 golgi vesicular membrane trafficking protein-like 0.165905
IL21R interleukin 21 receptor 0.165905
CNTNAP2 contactin associated protein-like 2 0.129504
RERE arginine-glutamic acid dipeptide (RE) repeats 0.129504
GRB10 growth factor receptor-bound protein 10 0.129504
RBMS3 RNA binding motif, single stranded interacting protein 3 0.129504
COL11A1 collagen, type XI, alpha 1 0.042592