90s preribosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. (Gene Ontology, GO_0030686)
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Genes

38 proteins co-occuring with the 90s preribosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
WDR12 WD repeat domain 12 1.98408
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) 1.97557
UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast) 1.91604
PES1 pescadillo ribosomal biogenesis factor 1 1.72682
CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 1.72369
WDR43 WD repeat domain 43 1.70878
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 1.66659
BOP1 block of proliferation 1 1.61706
UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) 1.47627
DCAF13 DDB1 and CUL4 associated factor 13 1.41699
NOL10 nucleolar protein 10 1.3896
RRP36 ribosomal RNA processing 36 homolog (S. cerevisiae) 1.38572
BMS1 BMS1 ribosome biogenesis factor 1.38516
UTP23 UTP23, small subunit (SSU) processome component, homolog (yeast) 1.35102
PDCD11 programmed cell death 11 1.28143
PWP1 PWP1 homolog (S. cerevisiae) 1.21686
RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) 1.20344
NAT10 N-acetyltransferase 10 (GCN5-related) 1.19983
TBL3 transducin (beta)-like 3 1.17517
TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 1.14494
WDR46 WD repeat domain 46 1.1429
RCL1 RNA terminal phosphate cyclase-like 1 1.04481
NHP2 NHP2 ribonucleoprotein 0.965512
XRN2 5'-3' exoribonuclease 2 0.843778
POLI polymerase (DNA directed) iota 0.777755
MRPL13 mitochondrial ribosomal protein L13 0.745929
RPS18P12 ribosomal protein S18 pseudogene 12 0.696905
RPS18 ribosomal protein S18 0.687701
UBTF upstream binding transcription factor, RNA polymerase I 0.68639
EEF2K eukaryotic elongation factor 2 kinase 0.675065
RPL13A ribosomal protein L13a 0.492157
RPS19 ribosomal protein S19 0.363567
TP53 tumor protein p53 0.232386
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.228108
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.217511
EMG1 EMG1 N1-specific pseudouridine methyltransferase 0.215063
NCL nucleolin 0.164315
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 0.16342