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Gene-list enrichment analysis against the manual database

Paste Entrez Gene Symbols here:	Create Subnetworks Connect targets Filter Experiments Use filter All HUMAN MOUSE RAT Species All HS578T MESC RAJI B CELLS AND IDC MCF7 THP-1 HELA CELLS STHDH H3396 BREAST CANCER CELLS HL60 HESC T-ALL MN9D 3T3-L1 PREADIPOCYTE CELLS HPC-7 OVARIAN SURFACE EPITHELIUM HACAT HCT116 U2OS WILMS TUMOR-DERIVED CCG99?11 HEPG2 INVIVO IN DEVELOPING LIMBS MOUSE LIVER TH1 CELL MOUSE MEFC HUMAN INTESTINAL CELL LINE CACO-2 XEN HEK293T K562 AK7 MEL NEUROBLASTOMA NEURONS R1E JURKAT E14 CD4+T T-47D RETINA TROPHOBLAST STEM CELLS LS174T NEPHRON PROGENITOR MULTIPLE HUMAN CANCER CELL TYPES 501MEL MEF PC3 EML CORTICAL_NEURONS CACO-2 CHIP-SEQ PRIMARY FETAL LIVER ERYTHROID CELLS KERATINOCYTES FETAL_BRAIN HELA U937_AND_SAOS2 CD4_POS_T MIN6 ADULT_RETINA ERYTHROLEUKEMIA RHABDOMYOSARCOMA 293T SW620 FORBRAIN_MIDBRAIN_LIMB_HEART LIVER LYMPHOBLASTOID VCAP SK-N-MC CADO-ES1 MEDULLOBLASTOMA M12 GC1-SPG FETAL-LIVER-ERYTHROID K562_HELA_HEPG2_GM12878 NT2 SHEP-21N LN229_GBM MCF-7 MELANOMA MYOFIBROBLAST TREG ERMYB HL-1 NTERA2 FETAL_OVARY MEGAKARYOCYTES HMVEC ZR75-1 J774 TLL THIOMACROPHAGE SPERMATOCYTES NEURO2A A2780 MONOCYTES BEAS2B H4IIE ERYTHROCYTE LNCAP PROSTATE CANCER CELL LINES STHDH STRIATAL CELLS MCF10A GC-B BL IMR90 EOC PCA E11.5 EMBRYO NCS MACROPHAGE PROSTATE_CANCER UTERI STRATIUM PALATE_MESENCHYMAL TROPHECTODERM OVCAR3 MALME-3M HFKS HEK293 HELA-AND-SCP4 CD34+ TESTIS PC12 E13_GONADS IB4-LCL LIVER-FROM-C57BL-MICE MDA-MB-231 MUSCLE MAMMARY-EPITHELIUM STHDH_STRIATAL U87 T47D Z138-A519-JVM2 C3H10T1-2 OLIGODENDROCYTES BETA-FORBRAIN-LENS DLD1 ATHEROSCLEROTIC-FOAM LCL-AND-THP1 TESTES NB4 PFSK-1 AND SK-N-MC EP156T GBM1-GSC NPCS CEREBELLUM HIPPOCAMPUS MACROPHAGES Cell Type All CHIP-CHIP CHIP-PET CHIP-SEQ MDA-MB-231 CHIP-PCR ChIP-Method
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An article that describes the ChEA system and its application: Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A. ChEA: Transcription Factor Regulation Inferred from Integrating Genome-Wide ChIP-X Experiments. Bioinformatics. 2010 Aug 13. [Epub ahead of print] |
| Ma'ayan Laboratory | Systems Biology Center New York | Mount Sinai School of Medicine |
Other related software and databases developed by the Ma'ayan Lab: KEA | GATE | Lists2Networks | Genes2Networks |
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