CHEA
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Gene-list enrichment analysis against the manual database

ChEA Tutorial
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Species Cell Type ChIP-Method
ChEA
Analyze with Enrichr Also, please try ChEA2
An article that describes the ChEA system and its application: Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A. ChEA: Transcription Factor Regulation Inferred from Integrating Genome-Wide ChIP-X Experiments. Bioinformatics. 2010 Aug 13. [Epub ahead of print] |
| Ma'ayan Laboratory | Systems Biology Center New York | Mount Sinai School of Medicine |
Other related software and databases developed by the Ma'ayan Lab: KEA | GATE | Lists2Networks | Genes2Networks |
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Try these other tools developed by the Ma'ayan Lab:
Enrichr- Analyze Gene Lists with over 30 Gene Set Libraries Drug Pair Seeker- Identify Pairs of Drugs that can Reverse or Mimic Gene Expression Patterns ChIP-X Enrichment Analysis- Database of Transcription Factors and their Target Genes extracted from ChIP-seq and ChIP-chip studies Kinase Enrichment Analysis- Database of Literature-Based Kinase Substrate Interactions LINCS Canvas Browser- Query and Visualize 1000's of L1000 Experiments GATE- Desktop Application for Gene Expression Time-Series Data Analysis Genes2FANs- Tools to Build Networks from List of Genes Sets2Networks- Tool to Build Networks from Gene-Set Libraries Expression2Kinases- Tool to Infer Cell Signaling Pathways from Sets of Differentially Expressed Genes Lists2Networks- Web-Based Platform for Performing Gene Set Enrichment Analyses Genes2Networks- Tool to Build Protein-Protein Interaction Networks from Lists of Genes ESCAPE- Database that Collects, Organizes and Visualizes High-Content Data from Embryonic Stem Cell Research