Enrichr
Computational Tool
FAIR Metrics
1 evaluation
General Information
DescriptionA comprehensive gene set enrichment analysis web server 2016 update
Homepagehttp://amp.pharm.mssm.edu/Enrichr
Publications
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
Maxim V. Kuleshov; Matthew R. Jones; Andrew D. Rouillard; Nicolas F. Fernandez; Qiaonan Duan; Zichen Wang; Simon Koplev; Sherry L. Jenkins; Kathleen M. Jagodnik; Alexander Lachmann; Michael G. McDermott; Caroline D. Monteiro; Gregory W. Gundersen; Avi Ma'ayan
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enrichr currently contains a large collection of diverse gene set libraries available for analysis and download. In total, Enrichr currently contains 180 184 annotated gene sets from 102 gene set libraries. New features have been added to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application programming interface and visualization of the results as clustergrams. Overall, Enrichr is a comprehensive resource for curated gene sets and a search engine that accumulates biological knowledge for further biological discoveries. Enrichr is freely available at: http://amp.pharm.mssm.edu/Enrichr.
Metrics:
65
Canned Analyses generated by the tool

Dataset Accession
Tool Name
Organism
Geneset
Cell Type
Disease Name
Drug Name
Hs Gene Symbol
Pert Type
Mm Gene Symbol

Enrichment analysis of genes downregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most downregulated genes identified by...
Enrichment analysis of genes upregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most upregulated genes identified by a...
Enrichment analysis of genes downregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most downregulated genes identified by...
Enrichment analysis of genes upregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most upregulated genes identified by a...
Enrichment analysis of genes downregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most downregulated genes identified by...
Enrichment analysis of genes upregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most upregulated genes identified by a...
Enrichment analysis of genes downregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most downregulated genes identified by...
Enrichment analysis of genes upregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most upregulated genes identified by a...
Enrichment analysis of genes downregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most downregulated genes identified by...
Enrichment analysis of genes upregulated in acute myocardial infarction
An enrichment analysis was performed on the top 500 most upregulated genes identified by a...
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Datasets analyzed by the tool

Keyword
Tool Name

GSE50588
The Functional Consequences of Variation in Transcription Factor Binding
294
GSE47856
Expression data from cultured human ovarian carcinoma cell lines with and without Cisplatin treatment
119
GSE6930
Cytosine arabinoside effect on Ewing's sarcoma cell line: time course and dose response
119
GSE7002
Formaldehyde effect on nasal epithelium: dose response and time course
119
GSE35366
Models of Neuronal Migration Defects: time course
112
GSE490
Pharmacogenomic effect of corticosteroid in skeletal muscle
112
GSE47150
Embryonic primary cortical neuron response to knockdown of multiple autism candidate genes
112
GSE60413
Parkinson Phenotype in Aged PINK1-Deficient Mice Is Accompanied by Progressive Mitochondrial Dysfunction in Absence of Neurodegeneration
105
GSE15129
Coenzyme Q10-dependent gene expression in SAMP1 mice tissues
105
GSE24278
Interstrain differences in the liver effects of trichloroethylene
98
...
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